Mercurial > repos > bgruening > deeptools_multi_bam_summary

comparison multiBamSummary.xml @ 10:024e6f9762af draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
author bgruening
date Thu, 11 Aug 2016 06:28:26 -0400
parents 3c94b764e274
children cd485e0524c2
comparison
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9:c214380b22a3 10:024e6f9762af
34 --region '$region' 34 --region '$region'
35 #end if 35 #end if
36 36
37 #if $advancedOpt.showAdvancedOpt == "yes": 37 #if $advancedOpt.showAdvancedOpt == "yes":
38 @ADVANCED_OPTS_READ_PROCESSING@ 38 @ADVANCED_OPTS_READ_PROCESSING@
39 @ADVANCED_OPTS_GTF@
40 @blacklist@
39 #end if 41 #end if
40 ]]> 42 ]]>
41 </command> 43 </command>
42 44
43 <inputs> 45 <inputs>
70 72
71 <expand macro="region_limit_operation" /> 73 <expand macro="region_limit_operation" />
72 74
73 <expand macro="advancedOpt_scaffold"> 75 <expand macro="advancedOpt_scaffold">
74 <expand macro="read_processing_options" /> 76 <expand macro="read_processing_options" />
77 <expand macro="gtf_options" />
78 <expand macro="blacklist" />
75 </expand> 79 </expand>
76 80
77 <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to file" help=""/> 81 <param argument="--outRawCounts" type="boolean" label="Save raw counts (coverages) to file" help=""/>
78 82
79 </inputs> 83 </inputs>