Mercurial > repos > bgruening > deeptools_multi_bam_summary
annotate deepTools_macros.xml @ 0:812bfd545d3a draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
| author | bgruening |
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| date | Mon, 25 Jan 2016 14:06:31 -0500 |
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| children | 92231fb0adda |
| rev | line source |
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0
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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1 <macros> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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2 |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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3 <xml name="advancedOpt_scaffold"> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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4 <conditional name="advancedOpt"> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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5 <param name="showAdvancedOpt" type="select" label="Show advanced options" > |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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6 <option value="no" selected="true">no</option> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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7 <option value="yes">yes</option> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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8 </param> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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9 <when value="no" /> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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10 <when value="yes"> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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11 <yield/> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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12 </when> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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13 </conditional> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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14 </xml> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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15 |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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16 <token name="@ADVANCED_OPTS_READ_PROCESSING@"> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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17 #if $advancedOpt.doExtendCustom.doExtend == 'custom': |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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18 --extendReads $advancedOpt.doExtendCustom.extendReadsValue |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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19 #else if $advancedOpt.doExtendCustom.doExtend == 'yes': |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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20 --extendReads |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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21 #end if |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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22 $advancedOpt.ignoreDuplicates |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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23 $advancedOpt.centerReads |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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24 #if $advancedOpt.minMappingQuality: |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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25 --minMappingQuality '$advancedOpt.minMappingQuality' |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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26 #end if |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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27 #if $advancedOpt.samFlagInclude: |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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28 --samFlagInclude $advancedOpt.samFlagInclude |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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29 #end if |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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30 #if $advancedOpt.samFlagExclude: |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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31 --samFlagExclude $advancedOpt.samFlagExclude |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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32 #end if |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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33 </token> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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34 |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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35 <xml name="heatmap_options"> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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36 <expand macro="zMin_zMax" /> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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37 <expand macro="colorMap" /> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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38 <expand macro="plotTitle" /> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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39 <expand macro="plotNumbers" /> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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40 </xml> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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41 |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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42 <token name="@HEATMAP_OPTIONS@"> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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43 #if str($plotting_type.zMin) != "": |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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44 --zMin $plotting_type.zMin |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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45 #end if |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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46 #if str($plotting_type.zMax) != "": |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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47 --zMax $plotting_type.zMax |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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48 #end if |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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49 --colorMap '$plotting_type.colorMap' |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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50 $plotting_type.plotNumbers |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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51 --plotTitle '$plotting_type.plotTitle' |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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52 </token> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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53 |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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54 |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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55 <xml name="includeZeros"> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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56 <param argument="--includeZeros" type="boolean" truevalue="--includeZeros" falsevalue="" |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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57 label="Include zeros" |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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58 help="If set, then regions with zero counts for *all* BAM files are included. The default behavior is to ignore such regions." /> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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59 </xml> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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60 |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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61 <xml name="zMin_zMax"> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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62 <param argument="--zMin" type="float" value="" optional="true" label="Minimum value for the heatmap intensities" |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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63 help="If not specified the value is set automatically."/> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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64 <param argument="--zMax" type="float" value="" optional="true" label="Maximum value for the heatmap intensities" |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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65 help="If not specified the value is set automatically."/> |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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66 </xml> |
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67 |
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68 <xml name="region_limit_operation"> |
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69 <param argument="--region" type="text" value="" |
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70 label="Region of the genome to limit the operation to" |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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71 help="This is useful when testing parameters to reduce the time required. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"." /> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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72 </xml> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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73 |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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74 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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75 <token name="@WRAPPER_VERSION@">2.0.1.0</token> |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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76 <xml name="requirements"> |
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812bfd545d3a
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77 <requirements> |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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78 <requirement type="package" version="2.7.10">python</requirement> |
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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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79 <requirement type="binary">@BINARY@</requirement> |
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80 <requirement type="package" version="2.0.1">deepTools</requirement> |
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81 <yield /> |
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82 </requirements> |
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83 <expand macro="stdio" /> |
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84 <version_command>@BINARY@ --version</version_command> |
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85 </xml> |
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86 |
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87 <xml name="smoothLength"> |
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88 <param argument="--smoothLength" type="integer" value="" optional="True" min="1" |
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89 label="Smooth values using the following length (in bases)" |
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90 help ="The smooth length defines a window, larger than the bin size, over which the number of reads is to be averaged. For example, if the bin size is set to 20 and the smooth length is 60, then, for each bin, its value is set to the average of it and its left and right neighbors. Any value smaller than the bin size will be ignored and no smoothing will be applied."/> |
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91 </xml> |
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92 |
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93 |
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94 <xml name="kmeans_clustering"> |
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95 <conditional name="used_multiple_regions"> |
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96 <param name="used_multiple_regions_options" type="select" |
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97 label="Did you compute the matrix with more than one groups of regions?" |
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98 help="Would you like to cluster the regions according to the similarity of the signal distribution? This is only possible if you used computeMatrix on only one group of regions."> |
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99 <option value="yes">Yes, I used multiple groups of regions</option> |
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100 <option value="no">No, I used only one group</option> |
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101 </param> |
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102 <when value="no"> |
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103 <conditional name="clustering"> |
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104 <param name="clustering_options" type="select" label="Clustering algorithm"> |
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105 <option value="none">No clustering</option> |
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106 <option value="kmeans">Kmeans clustering</option> |
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107 </param> |
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108 <when value="kmeans"> |
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109 <param name="k_kmeans" type="integer" value="0" label="Number of clusters to compute" |
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110 help="When this option is set, the matrix is split into clusters using the k-means algorithm. |
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111 This only works for data that is not grouped, otherwise only the first group will be clustered. |
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112 If more specific clustering methods are required it is advisable to save the underlying matrix and |
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113 run the clustering using other software."/> |
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114 </when> |
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115 <when value="none" /> |
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116 </conditional> |
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117 </when> |
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118 <when value="yes" /> |
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119 </conditional> |
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120 </xml> |
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121 |
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122 <token name="@KMEANS_CLUSTERING@"> |
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123 #if $advancedOpt.used_multiple_regions.used_multiple_regions_options == 'no': |
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124 #if $advancedOpt.used_multiple_regions.clustering.clustering_options == 'kmeans': |
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125 #if int($advancedOpt.used_multiple_regions.clustering.k_kmeans) > 0: |
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126 --kmeans $advancedOpt.used_multiple_regions.clustering.k_kmeans |
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127 #end if |
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128 #end if |
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129 #end if |
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130 </token> |
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131 |
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132 <xml name="samFlags"> |
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133 <param argument="--samFlagInclude" type="integer" optional="True" value="" |
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134 label="Include reads based on the SAM flag" |
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135 help= "For example, to get only reads that are the first mate use a flag of 64. This is useful to count properly paired reads only once, otherwise the second mate will be also considered for the coverage."/> |
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136 <param argument="--samFlagExclude" type="integer" optional="True" value="" |
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137 label="Exclude reads based on the SAM flag" |
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138 help= "For example, to get only reads that map to the forward strand, use --samFlagExclude 16, where 16 is the SAM flag for reads that map to the reverse strand."/> |
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139 </xml> |
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140 |
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141 <xml name="read_processing_options"> |
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142 <expand macro="extendReads" /> |
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143 <expand macro="ignoreDuplicates" /> |
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144 <expand macro="centerReads" /> |
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145 <expand macro="minMappingQuality" /> |
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146 <expand macro="samFlags" /> |
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147 </xml> |
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148 |
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149 <xml name="plotNumbers"> |
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150 <param argument="--plotNumbers" type="boolean" truevalue="--plotNumbers" falsevalue="" |
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151 label="Plot the correlation value" |
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152 help="If set, then the correlation number is plotted on top of the heatmap."/> |
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153 </xml> |
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154 |
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155 <xml name="extendReads"> |
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156 <conditional name="doExtendCustom"> |
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157 <param name="doExtend" type="select" label="Extend reads to the given average fragment size." |
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158 help="(1) Single-end reads and singletons are extended to match this length. (2) Paired-end reads are extended to match the fragment size, regardless of what is set here. |
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159 By default *each* read mate is extended. |
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160 This can be modified using the SAM flags (see --samFlagInclude and --samFlagExclude options) to keep only the first or the second mate. |
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161 Unmated reads, mate reads that map to different chromosomes or too far apart are extended to the given value. |
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162 Reads are only extended if --extendReads is set to a value greater than the read length. *NOTE*: For spliced-read data, this option is not |
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163 recommended as it will extend reads over skipped regions, e.g. introns in RNA-seq data."> |
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164 <option value="no" selected="True">No extension. The default value and most typically appropriate.</option> |
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165 <option value="yes">Paired-end extension. Suitable only for paired-end datasets.</option> |
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166 <option value="custom">A custom length, which will be applied to ALL reads.</option> |
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167 </param> |
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168 <when value="no" /> |
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169 <when value="yes" /> |
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170 <when value="custom"> |
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171 <param name="extendReadsValue" type="integer" value="300" min="1" |
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172 label="Extend reads to the given average fragment size" |
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173 help="Extend all reads to this length" /> |
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174 </when> |
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175 </conditional> |
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176 </xml> |
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177 |
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178 <xml name="corMethod"> |
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179 <param argument="--corMethod" type="select" label="Correlation method"> |
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180 <option value="spearman" selected="True">Spearman</option> |
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181 <option value="pearson">Pearson</option> |
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182 </param> |
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183 </xml> |
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184 |
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185 <xml name="distanceBetweenBins"> |
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186 <param argument="--distanceBetweenBins" type="integer" value="0" min="0" |
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187 label="Distance between bins" |
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188 help="By default, multiBamSummary considers consecutive bins of |
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189 the specified 'Bin size'. However, to reduce the |
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190 computation time, a larger distance between bins can |
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191 be given. Larger distances result in fewer bins being |
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192 considered."/> |
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193 </xml> |
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194 |
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195 <xml name="centerReads"> |
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196 <param argument="--centerReads" type="boolean" truevalue="--centerReads" falsevalue="" |
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197 label="Center regions with respect to the fragment length" |
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198 help="For paired-end data the fragment is defined by the bounds of the reads. For single-end data the bounds are defined by the read and the user-definable fragment/extension length. This option is useful to get a sharper signal around enriched regions."/> |
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199 </xml> |
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200 |
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201 <xml name="ignoreDuplicates"> |
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202 <param argument="--ignoreDuplicates" type="boolean" truevalue="--ignoreDuplicates" falsevalue="" |
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203 label="Ignore duplicates" |
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204 help="If set, reads that have the same orientation and start position will be considered only once. If reads are paired, the mate position also has to coincide to ignore a read." /> |
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205 </xml> |
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206 |
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207 <xml name="sortUsing"> |
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208 <param argument="--sortUsing" type="select" label="Method used for sorting" |
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209 help="For each row the method is computed."> |
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210 <option value="mean" selected="true">mean</option> |
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211 <option value="median">median</option> |
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212 <option value="min">min</option> |
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213 <option value="max">max</option> |
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214 <option value="sum">sum</option> |
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215 <option value="region_length">region length</option> |
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216 </param> |
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217 </xml> |
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218 |
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219 <xml name="sortRegions"> |
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220 <param argument="--sortRegions" type="select" label="Sort regions" |
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221 help="Whether the heatmap should present the regions sorted. The default is to sort in descending order based on the mean value per region."> |
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222 <option value="no">no ordering</option> |
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223 <option value="descend" selected="true">descending order</option> |
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224 <option value="ascend">ascending order</option> |
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225 </param> |
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226 </xml> |
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227 |
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228 <xml name="minMappingQuality"> |
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229 <param argument="--minMappingQuality" type="integer" optional="true" value="1" min="1" |
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230 label="Minimum mapping quality" |
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231 help= "If set, only reads with a mapping quality score higher than this value are considered."/> |
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232 </xml> |
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233 |
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234 <xml name="skipZeros"> |
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235 <param argument="--skipZeros" type="boolean" truevalue="--skipZeros" falsevalue="" |
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236 label ="Skip zeros" |
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237 help ="If set, then zero counts that happen for *all* BAM files given are ignored. This may result in fewer considered regions." /> |
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238 </xml> |
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239 |
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240 <xml name="fragmentLength"> |
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241 <param argument="--fragmentLength" type="integer" value="300" min="1" |
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242 label="Fragment length used for the sequencing" |
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243 help ="If paired-end reads are used, the fragment length is computed from the BAM file, so this is only needed for single-end data."/> |
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244 </xml> |
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245 |
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246 <xml name="scaleFactor"> |
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247 <param argument="--scaleFactor" type="float" value="1" label="Scaling factor" |
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248 help="When used in combination with --normalizeTo1x or |
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249 --normalizeUsingRPKM, the computed scaling factor will |
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250 be multiplied by the given scale factor." /> |
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251 </xml> |
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252 |
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253 <xml name="scaleFactors"> |
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254 <param name="scaleFactor1" type="float" value="1" label="Scale factor for treatment" help="(--scaleFactors)"/> |
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255 <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)"/> |
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256 </xml> |
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257 |
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258 <xml name="stdio"> |
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259 <stdio> |
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260 <exit_code range="1:" /> |
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261 <exit_code range=":-1" /> |
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262 <regex match="Error:" /> |
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263 <regex match="Exception:" /> |
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264 <regex match="EXception:" /> |
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265 <regex match="Traceback" /> |
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266 </stdio> |
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267 </xml> |
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268 |
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269 <xml name="pseudocount"> |
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270 <param argument="--pseudocount" type="float" value="1" label="Pseudocount" help="Small number to avoid dividing by zero."/> |
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271 </xml> |
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272 |
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273 <token name="@REFERENCES@"> |
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274 |
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275 .. class:: infomark |
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276 |
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277 For more information on the tools, please visit our `help site`_. |
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278 |
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279 If you would like to give us feedback or you run into any trouble, please send an email to deeptools@googlegroups.com |
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280 |
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281 This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_. |
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282 |
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283 .. _Bioinformatics and Deep-Sequencing Unit: http://www.ie-freiburg.mpg.de/bioinformaticsfac |
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284 .. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de |
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285 .. _help site: https://deeptools.readthedocs.org/ |
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286 |
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287 </token> |
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288 <xml name="citations"> |
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289 <citations> |
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290 <citation type="doi">10.1093/nar/gku365</citation> |
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291 <yield /> |
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292 </citations> |
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293 </xml> |
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294 |
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295 <xml name="multiple_input_bams"> |
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296 <param argument="--bamfiles" type="data" format="bam" min="2" |
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297 label="Bam file" multiple="true" |
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298 help="The BAM file must be sorted."/> |
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299 </xml> |
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300 |
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301 <xml name="multiple_input_bigwigs"> |
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302 <param argument="--bigwigfiles" type="data" format="bigwig" multiple="True" min="2" |
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303 label="Bigwig file" |
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304 help="A Bigwig file."/> |
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305 </xml> |
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306 |
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307 <xml name="plotTitle"> |
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308 <param argument="--plotTitle" type="text" value="" size="30" optional="True" |
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309 label="Title of the plot" |
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310 help="Title of the plot, to be printed on top of the generated image." /> |
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311 </xml> |
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312 |
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313 <token name="@multiple_input_bams@"> |
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314 <![CDATA[ |
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315 #set files=[] |
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316 #set labels=[] |
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317 #for $counter, $bamfile in enumerate($bamfiles): |
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318 ln -s "${bamfile}" "./${counter}.bam" && |
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319 ln -s "${bamfile.metadata.bam_index}" "./${counter}.bam.bai" && |
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320 #silent $files.append('%s.bam' % $counter) |
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321 #silent $labels.append('%s' % ($bamfile.display_name)) |
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322 #end for |
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323 ]]> |
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324 </token> |
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325 |
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326 <token name="@multiple_input_bigwigs@"> |
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327 <![CDATA[ |
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328 #set files=[] |
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329 #set labels=[] |
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330 #for $counter, $bigwig in enumerate($bigwigfiles): |
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331 ln -s "${bigwig}" "${counter}.bw" && |
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332 #silent $files.append('%s.bw' % $counter) |
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333 #silent $labels.append('%s' % ($bigwig.display_name)) |
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334 #end for |
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335 ]]> |
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336 </token> |
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337 |
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338 <xml name="reference_genome_source"> |
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339 <conditional name="source"> |
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340 <param name="ref_source" type="select" label="Reference genome"> |
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341 <option value="cached">locally cached</option> |
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342 <option value="history">in your history</option> |
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343 </param> |
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344 <when value="cached"> |
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345 <param name="input1_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team"> |
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346 <options from_data_table="lastz_seqs"> |
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347 <filter type="sort_by" column="1" /> |
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348 <validator type="no_options" message="No indexes are available." /> |
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349 </options> |
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350 </param> |
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351 </when> |
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352 <when value="history"> |
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353 <param name="input1" type="data" format="twobit" label="Select a reference dataset in 2bit format" /> |
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354 </when> |
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355 </conditional> |
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356 </xml> |
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357 |
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358 <token name="@reference_genome_source@"> |
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359 #if $source.ref_source=="history": |
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360 --genome $source.input1 |
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361 #else: |
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362 --genome "$source.input1_2bit.fields.path" |
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363 #end if |
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364 </token> |
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365 |
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366 <xml name="effectiveGenomeSize"> |
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367 <conditional name="effectiveGenomeSize"> |
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368 <param name="effectiveGenomeSize_opt" type="select" label="Effective genome size" |
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369 help="The effective genome size is the portion of the genome that is mappable. Large fractions of the genome are stretches of NNNN that should be discarded. |
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370 Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly. |
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371 See Table 2 of http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030377 or http://www.nature.com/nbt/journal/v27/n1/fig_tab/nbt.1518_T1.html for several effective genome sizes."> |
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372 <option value="93260000">ce10 (93260000)</option> |
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373 <option value="121400000">dm3 (121400000)</option> |
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374 <option value="2451960000" selected="true">hg19 (2451960000)</option> |
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375 <option value="2150570000">mm9 (2150570000)</option> |
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376 <option value="specific">user specified</option> |
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377 </param> |
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378 <when value="specific"> |
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379 <param argument="--effectiveGenomeSize" type="integer" value="" label="Effective genome size" help="e.g. ce10: 93260000, dm3: 121400000, hg19: 2451960000, mm9: 2150570000"/> |
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380 </when> |
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381 <when value="2150570000" /> |
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382 <when value="2451960000" /> |
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383 <when value="121400000" /> |
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384 <when value="93260000" /> |
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385 </conditional> |
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386 </xml> |
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387 |
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388 <xml name="skipNAs"> |
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389 <param argument="--skipNAs" type="boolean" truevalue="--skipNAs" falsevalue="" checked="False" |
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390 label="Ignore missing data?" |
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391 help="This parameter determines if non-covered regions |
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392 (regions without overlapping reads) in a bam/bigWig file |
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393 should be skipped. The default is to treat those |
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394 regions as having a value of zero. The decision to |
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395 skip non-covered regions depends on the interpretation |
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396 of the data. Non-covered regions may represent, for |
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397 example, repetitive regions that should be ignored. |
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398 (default: False)" /> |
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399 </xml> |
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400 |
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401 <xml name="input_save_matrix_values"> |
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402 <param argument="--saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/> |
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|
403 </xml> |
|
812bfd545d3a
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|
404 |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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|
405 <xml name="input_graphic_output_settings"> |
|
812bfd545d3a
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406 <conditional name="output" > |
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812bfd545d3a
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407 <param name="showOutputSettings" type="select" label="Show advanced output settings" > |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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408 <option value="no" selected="true">no</option> |
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812bfd545d3a
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409 <option value="yes">yes</option> |
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812bfd545d3a
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|
410 </param> |
|
812bfd545d3a
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411 <when value="no" /> |
|
812bfd545d3a
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412 <when value="yes"> |
|
812bfd545d3a
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413 <yield /> |
|
812bfd545d3a
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|
414 <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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415 </when> |
|
812bfd545d3a
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416 </conditional> |
|
812bfd545d3a
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417 </xml> |
|
812bfd545d3a
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|
418 |
|
812bfd545d3a
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|
419 |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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420 <xml name="input_image_file_format"> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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421 <param argument="--outFileFormat" type="select" label="Image file format"> |
|
812bfd545d3a
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422 <option value="png" selected="true">png</option> |
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812bfd545d3a
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423 <option value="pdf">pdf</option> |
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812bfd545d3a
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424 <option value="svg">svg</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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425 <option value="eps">eps</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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426 </param> |
|
812bfd545d3a
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427 </xml> |
|
812bfd545d3a
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428 |
|
812bfd545d3a
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429 <xml name="output_image_file_format"> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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430 <data format="png" name="outFileName" label="${tool.name} image"> |
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812bfd545d3a
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431 <change_format> |
|
812bfd545d3a
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432 <when input="output.outFileFormat" value="pdf" format="pdf" /> |
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812bfd545d3a
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433 <when input="output.outFileFormat" value="svg" format="svg" /> |
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812bfd545d3a
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434 <when input="output.outFileFormat" value="eps" format="eps" /> |
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812bfd545d3a
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435 </change_format> |
|
812bfd545d3a
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436 </data> |
|
812bfd545d3a
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437 </xml> |
|
812bfd545d3a
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438 |
|
812bfd545d3a
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439 <xml name="output_image_file_format_not_nested"> |
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812bfd545d3a
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440 <data format="png" name="outFileName" label="${tool.name} image"> |
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812bfd545d3a
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441 <change_format> |
|
812bfd545d3a
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442 <when input="outFileFormat" value="pdf" format="pdf" /> |
|
812bfd545d3a
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443 <when input="outFileFormat" value="svg" format="svg" /> |
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812bfd545d3a
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444 <when input="outFileFormat" value="eps" format="eps" /> |
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812bfd545d3a
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445 </change_format> |
|
812bfd545d3a
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446 </data> |
|
812bfd545d3a
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447 </xml> |
|
812bfd545d3a
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448 |
|
812bfd545d3a
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449 <xml name="output_save_matrix_values"> |
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812bfd545d3a
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450 <data format="tabular" name="outFileNameMatrix" label="${tool.name} on ${on_string}: Heatmap values"> |
|
812bfd545d3a
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451 <filter> |
|
812bfd545d3a
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|
452 (( |
|
812bfd545d3a
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453 output['showOutputSettings'] == 'yes' and |
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812bfd545d3a
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|
454 output['saveMatrix'] is True |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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|
455 )) |
|
812bfd545d3a
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|
456 </filter> |
|
812bfd545d3a
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|
457 </data> |
|
812bfd545d3a
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458 </xml> |
|
812bfd545d3a
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|
459 |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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460 <xml name="output_graphic_outputs"> |
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812bfd545d3a
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461 <data format="bed" name="outFileSortedRegions" label="${tool.name} on ${on_string}: sorted/filtered regions"> |
|
812bfd545d3a
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462 <filter> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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|
463 (( |
|
812bfd545d3a
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464 output['showOutputSettings'] == 'yes' and |
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812bfd545d3a
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465 output['saveSortedRegions'] is True |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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466 )) |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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467 </filter> |
|
812bfd545d3a
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468 </data> |
|
812bfd545d3a
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469 </xml> |
|
812bfd545d3a
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470 |
|
812bfd545d3a
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471 <xml name="colorMap"> |
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812bfd545d3a
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472 <param name="colorMap" type="select" label="Color map to use for the heatmap" help=" Available color map names can be found here: http://www.astro.lsa.umich.edu/~msshin/science/code/matplotlib_cm/"> |
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812bfd545d3a
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473 <option value="RdYlBu" selected="true">RdYlBu</option> |
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812bfd545d3a
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474 <option value="Accent">Accent</option> |
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475 <option value="Spectral">Spectral</option> |
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812bfd545d3a
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476 <option value="Set1">Set1</option> |
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812bfd545d3a
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477 <option value="Set2">Set2</option> |
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812bfd545d3a
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478 <option value="Set3">Set3</option> |
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812bfd545d3a
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479 <option value="Dark2">Dark2</option> |
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812bfd545d3a
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480 <option value="Reds">Reds</option> |
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812bfd545d3a
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481 <option value="Oranges">Oranges</option> |
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812bfd545d3a
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482 <option value="Greens">Greens</option> |
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812bfd545d3a
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483 <option value="Blues">Blues</option> |
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812bfd545d3a
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484 <option value="Greys">Greys</option> |
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812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
485 <option value="Purples">Purples</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
486 <option value="Paired">Paired</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
487 <option value="Pastel1">Pastel1</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
488 <option value="Pastel2">Pastel2</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
489 <option value="spring">spring</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
490 <option value="summer">summer</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
491 <option value="autumn">autumn</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
492 <option value="winter">winter</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
493 <option value="hot">hot</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
494 <option value="coolwarm">coolwarm</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
495 <option value="cool">cool</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
496 <option value="seismic">seismic</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
497 <option value="terrain">terrain</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
498 <option value="ocean">ocean</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
499 <option value="rainbow">rainbow</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
500 <option value="bone">bone</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
501 <option value="flag">flag</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
502 <option value="prism">prism</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
503 <option value="cubehelix">cubehelix</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
504 <option value="binary">binary</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
505 <option value="pink">pink</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
506 <option value="gray">gray</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
507 <option value="copper">copper</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
508 <option value="BrBG">BrBG</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
509 <option value="BuGn">BuGn</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
510 <option value="BuPu">BuPu</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
511 <option value="GnBu">GnBu</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
512 <option value="OrRd">OrRd</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
513 <option value="PiYG">PiYG</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
514 <option value="PRGn">PRGn</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
515 <option value="PuOr">PuOr</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
516 <option value="PuRd">PuRd</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
517 <option value="PuBu">PuBu</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
518 <option value="RdBu">RdBu</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
519 <option value="RdGy">RdGy</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
520 <option value="RdPu">RdPu</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
521 <option value="YlGn">YlGn</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
522 <option value="PuBuGn">PuBuGn</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
523 <option value="RdYlGn">RdYlGn</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
524 <option value="YlGnBu">YlGnBu</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
525 <option value="YlOrBr">YlOrBr</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
526 <option value="YlOrRd">YlOrRd</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
527 <option value="gist_gray">gist_gray</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
528 <option value="gist_stern">gist_stern</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
529 <option value="gist_earth">gist_earth</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
530 <option value="gist_yarg">gist_yarg</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
531 <option value="gist_ncar">gist_ncar</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
532 <option value="gist_rainbow">gist_rainbow</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
533 <option value="gist_heat">gist_heat</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
534 <option value="gnuplot">gnuplot</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
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parents:
diff
changeset
|
535 <option value="gnuplot2">gnuplot2</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
536 <option value="CMRmap">CMRmap</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
537 <option value="bwr">bwr</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
538 <option value="hsv">hsv</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
539 <option value="brg">brg</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
540 <option value="jet">jet</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
541 <option value="afmhot">afmhot</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
542 <option value="Accent_r">Accent reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
543 <option value="Spectral_r">Spectral reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
544 <option value="Set1_r">Set1 reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
545 <option value="Set2_r">Set2 reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
546 <option value="Set3_r">Set3 reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
547 <option value="Dark2_r">Dark2 reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
548 <option value="Reds_r">Reds reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
549 <option value="Oranges_r">Oranges reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
550 <option value="Greens_r">Greens reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
551 <option value="Blues_r">Blues reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
552 <option value="Greys_r">Greys reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
553 <option value="Purples_r">Purples reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
554 <option value="Paired_r">Paired reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
555 <option value="Pastel1_r">Pastel1 reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
556 <option value="Pastel2_r">Pastel2 reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
557 <option value="spring_r">spring reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
558 <option value="summer_r">summer reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
559 <option value="autumn_r">autumn reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
560 <option value="winter_r">winter reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
561 <option value="hot_r">hot reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
562 <option value="coolwarm_r">coolwarm reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
563 <option value="cool_r">cool reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
564 <option value="seismic_r">seismic reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
565 <option value="terrain_r">terrain reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
566 <option value="ocean_r">ocean reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
567 <option value="rainbow_r">rainbow reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
568 <option value="bone_r">bone reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
569 <option value="flag_r">flag reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
570 <option value="prism_r">prism reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
571 <option value="cubehelix_r">cubehelix reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
572 <option value="binary_r">binary reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
573 <option value="pink_r">pink reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
574 <option value="gray_r">gray reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
575 <option value="copper_r">copper reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
576 <option value="BrBG_r">BrBG reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
577 <option value="BuGn_r">BuGn reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
578 <option value="BuPu_r">BuPu reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
579 <option value="GnBu_r">GnBu reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
580 <option value="OrRd_r">OrRd reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
581 <option value="PiYG_r">PiYG reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
582 <option value="PRGn_r">PRGn reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
583 <option value="PuOr_r">PuOr reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
584 <option value="PuRd_r">PuRd reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
585 <option value="PuBu_r">PuBu reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
586 <option value="RdBu_r">RdBu reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
587 <option value="RdGy_r">RdGy reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
588 <option value="RdPu_r">RdPu reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
589 <option value="YlGn_r">YlGn reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
590 <option value="PuBuGn_r">PuBuGn reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
591 <option value="RdYlBu_r">RdYlBu reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
592 <option value="RdYlGn_r">RdYlGn reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
593 <option value="YlGnBu_r">YlGnBu reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
594 <option value="YlOrBr_r">YlOrBr reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
595 <option value="YlOrRd_r">YlOrRd reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
596 <option value="gist_gray_r">gist_gray reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
597 <option value="gist_stern_r">gist_stern reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
598 <option value="gist_earth_r">gist_earth reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
599 <option value="gist_yarg_r">gist_yarg reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
600 <option value="gist_ncar_r">gist_ncar reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
601 <option value="gist_rainbow_r">gist_rainbow reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
602 <option value="gist_heat_r">gist_heat reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
603 <option value="gnuplot_r">gnuplot reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
604 <option value="gnuplot2_r">gnuplot2 reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
605 <option value="CMRmap_r">CMRmap reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
606 <option value="bwr_r">bwr reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
607 <option value="hsv_r">hsv reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
608 <option value="brg_r">brg reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
609 <option value="jet_r">jet reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
610 <option value="afmhot_r">afmhot reversed</option> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
611 </param> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
612 |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
613 </xml> |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
parents:
diff
changeset
|
614 |
|
812bfd545d3a
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 0a9265a12a303b54cdaa974e82e87c2ac60962ee
bgruening
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diff
changeset
|
615 </macros> |