Mercurial > repos > bgruening > deeptools_correct_gc_bias
changeset 26:adbd81f90050 draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit 999ec5d9b5882702497d8117a7d26536a67e19ca
| author | bgruening |
|---|---|
| date | Tue, 24 Jan 2017 04:05:43 -0500 |
| parents | bbaa1e884d6e |
| children | 34fe79f65435 |
| files | deepTools_macros.xml repository_dependencies.xml tool_dependencies.xml |
| diffstat | 3 files changed, 11 insertions(+), 11 deletions(-) [+] |
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--- a/deepTools_macros.xml Mon Dec 05 07:52:58 2016 -0500 +++ b/deepTools_macros.xml Tue Jan 24 04:05:43 2017 -0500 @@ -98,11 +98,11 @@ </xml> <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> - <token name="@WRAPPER_VERSION@">2.4.1</token> + <token name="@WRAPPER_VERSION@">2.4.2</token> <xml name="requirements"> <requirements> <requirement type="package" version="2.7.10">python</requirement> - <requirement type="package" version="2.4.1">deeptools</requirement> + <requirement type="package" version="2.4.2">deeptools</requirement> <yield /> </requirements> <expand macro="stdio" /> @@ -299,7 +299,7 @@ <param argument="--sortRegions" type="select" label="Sort regions" help="Whether the heatmap should present the regions sorted. The default is to sort in descending order based on the mean value per region."> <option value="no">no ordering</option> - <option value="descend">descending order</option> + <option value="descend" selected="true">descending order</option> <option value="ascend">ascending order</option> </param> </xml> @@ -450,10 +450,10 @@ #end for #else: #for $counter, $f in enumerate($multibam_conditional.multibam_repeats): - ln -s "${f.bamfile}" "./${counter}.bam" && - ln -s "${f.bamfile.metadata.bam_index}" "./${counter}.bam.bai" && + ln -s "${f.bamfiles}" "./${counter}.bam" && + ln -s "${f.bamfiles.metadata.bam_index}" "./${counter}.bam.bai" && #silent $files.append('%s.bam' % $counter) - #silent $labels.append("'%s'" % ($f.bamfile.display_name)) + #silent $labels.append("'%s'" % ($f.bamfiles.display_name)) #end for #end if ]]> @@ -471,9 +471,9 @@ #end for #else: #for $counter, $f in enumerate($multibigwig_conditional.multibigwig_repeats): - ln -s "${f.bigwig}" "${counter}.bw" && + ln -s "${f.bigwigfiles}" "${counter}.bw" && #silent $files.append('%s.bw' % $counter) - #silent $labels.append("'%s'" % ($f.bigwig.display_name)) + #silent $labels.append("'%s'" % ($f.bigwigfiles.display_name)) #end for #end if ]]>
--- a/repository_dependencies.xml Mon Dec 05 07:52:58 2016 -0500 +++ b/repository_dependencies.xml Tue Jan 24 04:05:43 2017 -0500 @@ -1,4 +1,4 @@ <?xml version="1.0"?> <repositories> - <repository changeset_revision="26e3ae5f74ed" name="data_manager_twobit_builder" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="298d15849a14" name="data_manager_twobit_builder" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </repositories>
--- a/tool_dependencies.xml Mon Dec 05 07:52:58 2016 -0500 +++ b/tool_dependencies.xml Tue Jan 24 04:05:43 2017 -0500 @@ -3,7 +3,7 @@ <package name="python" version="2.7.10"> <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="deeptools" version="2.4.1"> - <repository changeset_revision="939327bd44e7" name="package_python_2_7_deeptools_2_4_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <package name="deeptools" version="2.4.2"> + <repository changeset_revision="13e8eb777151" name="package_python_2_7_deeptools_2_4_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>