Mercurial > repos > bgruening > deeptools_bigwig_compare
changeset 22:7aba4f9904ff draft
planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit cbb142cf0582948030f99621d5dd65ab80caa296
| author | bgruening |
|---|---|
| date | Thu, 11 Aug 2016 06:27:13 -0400 |
| parents | 89766a53cb44 |
| children | 62f14e7e56d1 |
| files | bigwigCompare.xml deepTools_macros.xml static/images/plotEnrichment_output.png test-data/bamCompare_result1.bg test-data/bamCoverage_result1.bw test-data/bamCoverage_result2.bw test-data/bamCoverage_result3.bg test-data/bamCoverage_result4.bg test-data/bamCoverage_result4.bw test-data/bamCoverage_result5.bw test-data/bamPEFragmentSize_histogram_result1.png test-data/bamPEFragmentSize_result1.txt test-data/correctGCBias_result1.bam test-data/plotEnrichment_output.png test-data/plotEnrichment_output.txt test-data/plotFingerprint_result2.tabular |
| diffstat | 16 files changed, 837 insertions(+), 723 deletions(-) [+] |
line wrap: on
line diff
--- a/bigwigCompare.xml Fri May 13 16:59:57 2016 -0400 +++ b/bigwigCompare.xml Thu Aug 11 06:27:13 2016 -0400 @@ -34,6 +34,7 @@ #if $advancedOpt.plotTitle and str($advancedOpt.plotTitle.value) != "": --plotTitle '$advancedOpt.plotTitle' #end if + @blacklist@ #end if ]]> @@ -43,16 +44,20 @@ <param name="bigwigFile2" format="bigwig" type="data" label="bigWig file" /> <conditional name="comparison"> - <param name="comparison_select" type="select" + <param name="comparison_select" type="select" label="How to compare the two files" help="The default is to output the log2ratio between the two samples. The reciprocal ratio returns the negative of the inverse of the ratio if - the ratio is less than 0. The resulting values are interpreted as negative fold changes. (--ratio)"> - <option value="log2" selected="true">compute log2 of the number of reads ratio</option> - <option value="ratio">compute the ratio of the number of reads</option> - <option value="subtract">compute difference (subtract input from treatment) of the number of reads</option> - <option value="add">compute the sum over all reads</option> + the ratio is less than 0. The resulting values are interpreted as negative + fold changes. To output the scaled values from the first or second BAM file, + select 'first' or 'second'."> + <option value="log2" selected="true">Compute log2 of the number of reads ratio</option> + <option value="ratio">Compute the ratio of the number of reads</option> + <option value="subtract">Compute difference (subtract input from treatment) of the number of reads</option> + <option value="add">Compute the sum of number of reads</option> <option value="reciprocal_ratio">Computes the fold change. If the fold change is less than 1, the negative of the inverse is reported. E.g. A fold change of 10 to 5 would be reported not as 0.5 but as -2</option> + <option value="first">Returns the scaled value of the first BAM file</option> + <option value="second">Returns the scaled value of the second BAM file</option> </param> <when value="log2"> <expand macro="pseudocount" /> @@ -62,6 +67,8 @@ </when> <when value="subtract" /> <when value="add" /> + <when value="first" /> + <when value="second" /> <when value="reciprocal_ratio"> <expand macro="pseudocount" /> </when> @@ -88,6 +95,7 @@ <expand macro="skipNAs" /> <expand macro="scaleFactors" /> <expand macro="plotTitle" /> + <expand macro="blacklist" /> </when> </conditional> </inputs>
--- a/deepTools_macros.xml Fri May 13 16:59:57 2016 -0400 +++ b/deepTools_macros.xml Thu Aug 11 06:27:13 2016 -0400 @@ -30,6 +30,25 @@ #if $advancedOpt.samFlagExclude: --samFlagExclude $advancedOpt.samFlagExclude #end if + #if $advancedOpt.minFragmentLength: + --minFragmentLength $advancedOpt.minFragmentLength + #end if + #if $advancedOpt.maxFragmentLength: + --maxFragmentLength $advancedOpt.maxFragmentLength + #end if + </token> + + <token name="@ADVANCED_OPTS_GTF@"> + $advancedOpt.metagene + #if $advancedOpt.transcriptID: + --transcriptID $advancedOpt.transcriptID + #end if + #if $advancedOpt.exonID: + --exonID $advancedOpt.exonID + #end if + #if $advancedOpt.transcript_id_designator: + --transcript_id_designator $advancedOpt.transcript_id_designator + #end if </token> <xml name="heatmap_options"> @@ -59,9 +78,9 @@ </xml> <xml name="zMin_zMax"> - <param argument="--zMin" type="float" value="" optional="true" label="Minimum value for the heatmap intensities" + <param argument="--zMin" type="text" value="" optional="true" label="Minimum value for the heatmap intensities" help="If not specified the value is set automatically."/> - <param argument="--zMax" type="float" value="" optional="true" label="Maximum value for the heatmap intensities" + <param argument="--zMax" type="text" value="" optional="true" label="Maximum value for the heatmap intensities" help="If not specified the value is set automatically."/> </xml> @@ -159,14 +178,43 @@ help= "For example, to get only reads that map to the forward strand, use --samFlagExclude 16, where 16 is the SAM flag for reads that map to the reverse strand."/> </xml> + <xml name="fragLength"> + <param argument="--minFragmentLength" type="integer" optional="True" value="0" min="0" + label="Minimum fragment length for inclusion." + help="A value greater than 0 will filter out ALL single-end reads. This is primarily useful in things like ATACseq, where one would like to look specifically at mono- or di-nucleosome fragments." /> + <param argument="--maxFragmentLength" type="integer" optional="True" value="0" min="0" + label="Maximum fragment length for inclusion." + help="As above, but the maximum length. A value of 0 (the default) is equivalent to no maximum." /> + </xml> + <xml name="read_processing_options"> <expand macro="extendReads" /> <expand macro="ignoreDuplicates" /> <expand macro="centerReads" /> <expand macro="minMappingQuality" /> <expand macro="samFlags" /> + <expand macro="fragLength" /> </xml> + <xml name="gtf_options"> + <param argument="--metagene" type="boolean" truevalue="--boolean" falsevalue="" + label="Use a metagene model" + help="If set and a BED12 or GTF file or files is used to provide regions, only exons will be used. This is convenient for looking at coverage over mature mRNA transcripts or similar uses where introns should be ignored." /> + <param argument="--transcriptID" optional="True" value="transcript" type="text" + label="trascript designator" + help="When a GTF file is used to provide regions, only entries with this value as their feature (column 2) will be processed as transcripts. Default: transcript" /> + <param argument="--exonID" optional="True" value="exon" type="text" + label="exon designator" + help="When a GTF file is used to provide regions, only entries with this value as their feature (column 2) will be processed as exons. CDS would be another common value for this. Default: exon" /> + <param argument="--transcript_id_designator" optional="True" value="transcript_id" type="text" + label="transcriptID key designator" + help="Each region has an ID (e.g., ACTB) assigned to it, which for BED files is either column 4 (if it exists) + or the interval bounds. For GTF files this is instead stored in the last column as a key:value pair (e.g., + as 'transcript_id ACTB', for a key of transcript_id and a value of ACTB). In some cases it can be + convenient to use a different identifier. To do so, set this to the desired key. Default: transcript_id" /> + </xml> + + <xml name="plotNumbers"> <param argument="--plotNumbers" type="boolean" truevalue="--plotNumbers" falsevalue="" label="Plot the correlation value" @@ -247,7 +295,7 @@ </xml> <xml name="minMappingQuality"> - <param argument="--minMappingQuality" type="integer" optional="true" value="1" min="1" + <param argument="--minMappingQuality" type="integer" optional="true" value="1" min="0" label="Minimum mapping quality" help= "If set, only reads with a mapping quality score higher than this value are considered."/> </xml> @@ -363,6 +411,47 @@ ]]> </token> + <xml name="blacklist"> + <param argument="--blackListFileName" type="data" format="bed,gtf" multiple="true" optional="true" min="0" + label="Blacklisted regions in BED/GTF format" + help="One or more files containing regions to exclude from the analysis" /> + </xml> + + <token name="@blacklist@"> +<![CDATA[ + #if ' '.join( map(str, $advancedOpt.blackListFileName) ) != 'None': + #set blfiles=[] + #for $f in $advancedOpt.blackListFileName: + #silent $blfiles.append("'%s'" % $f) + #end for + #if $blfiles != ["'None'"]: + --blackListFileName #echo ' '.join($blfiles)# + #end if + #end if +]]> + </token> + + <xml name="multiple_bed"> + <param argument="--BED" type="data" format="bed,gtf" min="1" multiple="true" + label="Regions in BED/GTF format" + help="One or more files containing regions to include in the analysis" /> + </xml> + + <token name="@multiple_bed@"> +<![CDATA[ + #set files=[] + #set labels=[] + #for $f in $BED: + #silent $files.append("'%s'" % $f) + #silent $labels.append("'%s'" % $f.display_name) + #end for + #if len($files) > 0: + --BED #echo ' '.join($files)# + --regionLabels #echo ' '.join($labels)# + #end if +]]> + </token> + <xml name="reference_genome_source"> <conditional name="source"> <param name="ref_source" type="select" label="Reference genome"> @@ -404,7 +493,8 @@ <option value="specific">user specified</option> </param> <when value="specific"> - <param argument="--effectiveGenomeSize" type="integer" value="" label="Effective genome size" help="e.g. ce10: 93260000, dm3: 121400000, hg19: 2451960000, mm9: 2150570000"/> + <param argument="--effectiveGenomeSize" type="integer" value="" label="Effective genome size" + help="e.g. ce10: 93260000, dm3: 121400000, hg19: 2451960000, mm9: 2150570000"/> </when> <when value="2150570000" /> <when value="2451960000" /> @@ -439,7 +529,10 @@ <when value="no" /> <when value="yes"> <yield /> - <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/> + <param name="saveSortedRegions" type="boolean" + label="Save the regions after skipping zeros or min/max threshold values" + help="The order of the regions in the file follows the sorting order selected. This is useful, + for example, to generate other heatmaps keeping the sorting of the first heatmap."/> </when> </conditional> </xml> @@ -454,6 +547,11 @@ </param> </xml> + <xml name="output_dpi"> + <param argument="--dpi" name="dpi" type="integer" value="200" size="3" optional="True" + label="Image dpi" help=""/> + </xml> + <xml name="output_image_file_format"> <data format="png" name="outFileName" label="${tool.name} image"> <change_format> @@ -497,7 +595,9 @@ </xml> <xml name="colorMap"> - <param name="colorMap" type="select" label="Color map to use for the heatmap" help=" Available color map names can be found here: http://matplotlib.org/examples/color/colormaps_reference.html"> + <param name="colorMap" type="select" label="Color map to use for the heatmap" + help=" Available color map names can be found here: http://matplotlib.org/examples/color/colormaps_reference.html" + multiple="true"> <option value="RdYlBu" selected="true">RdYlBu</option> <option value="Accent">Accent</option> <option value="Spectral">Spectral</option>
--- a/test-data/bamCompare_result1.bg Fri May 13 16:59:57 2016 -0400 +++ b/test-data/bamCompare_result1.bg Thu Aug 11 06:27:13 2016 -0400 @@ -1,1 +1,1 @@ -chrM 0 16569 1.0 +chrM 0 16569 1.00
--- a/test-data/bamCoverage_result3.bg Fri May 13 16:59:57 2016 -0400 +++ b/test-data/bamCoverage_result3.bg Thu Aug 11 06:27:13 2016 -0400 @@ -1,8 +1,7 @@ -chrM 0 10 18498299.57 -chrM 10 200 9768764.94 -chrM 200 210 10184457.07 -chrM 210 220 9976611.00 +chrM 0 210 9768764.94 +chrM 210 220 9560918.88 chrM 220 230 7690304.31 -chrM 230 240 6027535.81 +chrM 230 240 5196151.56 chrM 240 250 3325537.00 chrM 250 260 623538.19 +chrM 260 16569 0.00
--- a/test-data/bamCoverage_result4.bg Fri May 13 16:59:57 2016 -0400 +++ b/test-data/bamCoverage_result4.bg Thu Aug 11 06:27:13 2016 -0400 @@ -1,472 +1,472 @@ -phiX174 0 10 16038.46 -phiX174 10 20 48115.38 -phiX174 20 70 144346.15 -phiX174 70 80 192461.54 -phiX174 80 90 176423.08 -phiX174 90 100 160384.62 -phiX174 100 120 112269.23 -phiX174 120 140 144346.15 -phiX174 140 150 160384.62 -phiX174 150 160 128307.69 -phiX174 160 170 160384.62 -phiX174 170 180 176423.08 -phiX174 180 200 208500.00 -phiX174 200 210 192461.54 -phiX174 210 220 240576.92 -phiX174 220 230 272653.85 -phiX174 230 240 336807.69 -phiX174 240 250 320769.23 -phiX174 250 260 288692.31 -phiX174 260 270 336807.69 -phiX174 270 280 400961.54 -phiX174 280 300 417000.00 -phiX174 300 310 352846.15 -phiX174 310 320 320769.23 -phiX174 320 330 368884.62 -phiX174 330 340 352846.15 -phiX174 340 350 288692.31 -phiX174 350 360 256615.38 -phiX174 360 370 224538.46 -phiX174 370 380 240576.92 -phiX174 380 390 304730.77 -phiX174 390 400 256615.38 -phiX174 400 410 240576.92 -phiX174 410 420 224538.46 -phiX174 420 450 288692.31 -phiX174 450 460 304730.77 -phiX174 460 470 336807.69 -phiX174 470 490 417000.00 -phiX174 490 510 497192.31 -phiX174 510 520 465115.38 -phiX174 520 530 561346.15 -phiX174 530 540 497192.31 -phiX174 540 550 529269.23 -phiX174 550 560 545307.69 -phiX174 560 570 641538.46 -phiX174 570 580 625500.00 -phiX174 580 590 561346.15 -phiX174 590 600 609461.54 -phiX174 600 610 545307.69 -phiX174 610 630 625500.00 -phiX174 630 640 577384.62 -phiX174 640 650 513230.77 -phiX174 650 660 545307.69 -phiX174 660 670 561346.15 -phiX174 670 680 593423.08 -phiX174 680 690 657576.92 -phiX174 690 700 641538.46 -phiX174 700 710 561346.15 -phiX174 710 730 593423.08 -phiX174 730 740 513230.77 -phiX174 740 760 593423.08 -phiX174 760 770 497192.31 -phiX174 770 780 513230.77 -phiX174 780 790 529269.23 -phiX174 790 800 545307.69 -phiX174 800 810 449076.92 -phiX174 810 820 433038.46 -phiX174 820 830 368884.62 -phiX174 830 840 320769.23 -phiX174 840 850 352846.15 -phiX174 850 860 304730.77 -phiX174 860 870 336807.69 -phiX174 870 880 256615.38 -phiX174 880 890 352846.15 -phiX174 890 900 384923.08 -phiX174 900 910 465115.38 -phiX174 910 920 545307.69 -phiX174 920 930 561346.15 -phiX174 930 940 545307.69 -phiX174 940 950 577384.62 -phiX174 950 960 593423.08 -phiX174 960 970 513230.77 -phiX174 970 980 481153.85 -phiX174 980 990 433038.46 -phiX174 990 1000 417000.00 -phiX174 1000 1010 449076.92 -phiX174 1010 1030 577384.62 -phiX174 1030 1040 753807.69 -phiX174 1040 1050 785884.62 -phiX174 1050 1060 817961.54 -phiX174 1060 1070 866076.92 -phiX174 1070 1080 834000.00 -phiX174 1080 1090 866076.92 -phiX174 1090 1100 769846.15 -phiX174 1100 1110 737769.23 -phiX174 1110 1120 657576.92 -phiX174 1120 1130 641538.46 -phiX174 1130 1140 625500.00 -phiX174 1140 1150 673615.38 -phiX174 1150 1160 625500.00 -phiX174 1160 1170 593423.08 -phiX174 1170 1180 609461.54 -phiX174 1180 1190 577384.62 -phiX174 1190 1200 513230.77 -phiX174 1200 1210 481153.85 -phiX174 1210 1220 561346.15 -phiX174 1220 1230 481153.85 -phiX174 1230 1240 449076.92 -phiX174 1240 1250 352846.15 -phiX174 1250 1260 336807.69 -phiX174 1260 1270 400961.54 -phiX174 1270 1280 352846.15 -phiX174 1280 1290 368884.62 -phiX174 1290 1300 320769.23 -phiX174 1300 1310 384923.08 -phiX174 1310 1320 513230.77 -phiX174 1320 1330 497192.31 -phiX174 1330 1340 513230.77 -phiX174 1340 1350 481153.85 -phiX174 1350 1370 497192.31 -phiX174 1370 1390 465115.38 -phiX174 1390 1400 352846.15 -phiX174 1400 1410 449076.92 -phiX174 1410 1430 481153.85 -phiX174 1430 1450 545307.69 -phiX174 1450 1460 561346.15 -phiX174 1460 1470 577384.62 -phiX174 1470 1480 609461.54 -phiX174 1480 1490 593423.08 -phiX174 1490 1500 545307.69 -phiX174 1500 1510 657576.92 -phiX174 1510 1520 625500.00 -phiX174 1520 1540 785884.62 -phiX174 1540 1550 721730.77 -phiX174 1550 1570 753807.69 -phiX174 1570 1580 769846.15 -phiX174 1580 1590 673615.38 -phiX174 1590 1600 625500.00 -phiX174 1600 1610 561346.15 -phiX174 1610 1620 529269.23 -phiX174 1620 1630 497192.31 -phiX174 1630 1640 465115.38 -phiX174 1640 1650 481153.85 -phiX174 1650 1660 497192.31 -phiX174 1660 1670 529269.23 -phiX174 1670 1680 593423.08 -phiX174 1680 1690 513230.77 -phiX174 1690 1700 529269.23 -phiX174 1700 1710 593423.08 -phiX174 1710 1720 545307.69 -phiX174 1720 1730 529269.23 -phiX174 1730 1740 577384.62 -phiX174 1740 1750 529269.23 -phiX174 1750 1760 433038.46 -phiX174 1760 1770 417000.00 -phiX174 1770 1780 368884.62 -phiX174 1780 1790 352846.15 -phiX174 1790 1810 336807.69 -phiX174 1810 1820 320769.23 -phiX174 1820 1830 465115.38 -phiX174 1830 1860 705692.31 -phiX174 1860 1870 801923.08 -phiX174 1870 1880 737769.23 -phiX174 1880 1890 673615.38 -phiX174 1890 1900 705692.31 -phiX174 1900 1910 609461.54 -phiX174 1910 1920 400961.54 -phiX174 1920 1930 465115.38 -phiX174 1930 1940 545307.69 -phiX174 1940 1950 449076.92 -phiX174 1950 1960 481153.85 -phiX174 1960 1970 529269.23 -phiX174 1970 1980 673615.38 -phiX174 1980 1990 641538.46 -phiX174 1990 2000 657576.92 -phiX174 2000 2010 673615.38 -phiX174 2010 2020 641538.46 -phiX174 2020 2030 657576.92 -phiX174 2030 2050 673615.38 -phiX174 2050 2060 481153.85 -phiX174 2060 2070 513230.77 -phiX174 2070 2080 481153.85 -phiX174 2080 2100 513230.77 -phiX174 2100 2110 529269.23 -phiX174 2110 2120 513230.77 -phiX174 2120 2130 529269.23 -phiX174 2130 2140 545307.69 -phiX174 2140 2150 513230.77 -phiX174 2150 2160 545307.69 -phiX174 2160 2170 417000.00 -phiX174 2170 2180 352846.15 -phiX174 2180 2190 433038.46 -phiX174 2190 2200 449076.92 -phiX174 2200 2210 433038.46 -phiX174 2210 2220 481153.85 -phiX174 2220 2230 545307.69 -phiX174 2230 2240 593423.08 -phiX174 2240 2250 625500.00 -phiX174 2250 2260 721730.77 -phiX174 2260 2270 625500.00 -phiX174 2270 2290 593423.08 -phiX174 2290 2300 609461.54 -phiX174 2300 2310 737769.23 -phiX174 2310 2320 769846.15 -phiX174 2320 2330 866076.92 -phiX174 2330 2340 850038.46 -phiX174 2340 2350 898153.85 -phiX174 2350 2360 801923.08 -phiX174 2360 2370 914192.31 -phiX174 2370 2380 801923.08 -phiX174 2380 2390 641538.46 -phiX174 2390 2400 593423.08 -phiX174 2400 2410 417000.00 -phiX174 2410 2420 400961.54 -phiX174 2420 2430 352846.15 -phiX174 2430 2440 481153.85 -phiX174 2440 2450 449076.92 -phiX174 2450 2460 609461.54 -phiX174 2460 2470 673615.38 -phiX174 2470 2480 737769.23 -phiX174 2480 2490 753807.69 -phiX174 2490 2500 769846.15 -phiX174 2500 2510 785884.62 -phiX174 2510 2520 641538.46 -phiX174 2520 2530 657576.92 -phiX174 2530 2540 529269.23 -phiX174 2540 2550 465115.38 -phiX174 2550 2560 384923.08 -phiX174 2560 2570 433038.46 -phiX174 2570 2590 465115.38 -phiX174 2590 2600 449076.92 -phiX174 2600 2620 529269.23 -phiX174 2620 2630 545307.69 -phiX174 2630 2640 689653.85 -phiX174 2640 2650 625500.00 -phiX174 2650 2660 561346.15 -phiX174 2660 2670 545307.69 -phiX174 2670 2680 609461.54 -phiX174 2680 2700 657576.92 -phiX174 2700 2710 625500.00 -phiX174 2710 2720 593423.08 -phiX174 2720 2740 657576.92 -phiX174 2740 2750 817961.54 -phiX174 2750 2760 866076.92 -phiX174 2760 2770 850038.46 -phiX174 2770 2780 882115.38 -phiX174 2780 2790 962307.69 -phiX174 2790 2800 817961.54 -phiX174 2800 2810 834000.00 -phiX174 2810 2820 801923.08 -phiX174 2820 2830 673615.38 -phiX174 2830 2840 705692.31 -phiX174 2840 2860 625500.00 -phiX174 2860 2870 609461.54 -phiX174 2870 2880 705692.31 -phiX174 2880 2890 657576.92 -phiX174 2890 2900 609461.54 -phiX174 2900 2910 657576.92 -phiX174 2910 2930 561346.15 -phiX174 2930 2940 513230.77 -phiX174 2940 2950 561346.15 -phiX174 2950 2960 497192.31 -phiX174 2960 2970 577384.62 -phiX174 2970 2980 593423.08 -phiX174 2980 2990 513230.77 -phiX174 2990 3000 529269.23 -phiX174 3000 3010 561346.15 -phiX174 3010 3020 513230.77 -phiX174 3020 3030 465115.38 -phiX174 3030 3040 433038.46 -phiX174 3040 3050 417000.00 -phiX174 3050 3060 545307.69 -phiX174 3060 3070 561346.15 -phiX174 3070 3080 625500.00 -phiX174 3080 3100 577384.62 -phiX174 3100 3110 721730.77 -phiX174 3110 3120 673615.38 -phiX174 3120 3130 641538.46 -phiX174 3130 3140 609461.54 -phiX174 3140 3160 673615.38 -phiX174 3160 3180 769846.15 -phiX174 3180 3190 705692.31 -phiX174 3190 3200 657576.92 -phiX174 3200 3210 673615.38 -phiX174 3210 3220 737769.23 -phiX174 3220 3230 657576.92 -phiX174 3230 3240 705692.31 -phiX174 3240 3250 625500.00 -phiX174 3250 3260 545307.69 -phiX174 3260 3270 593423.08 -phiX174 3270 3280 625500.00 -phiX174 3280 3290 577384.62 -phiX174 3290 3300 529269.23 -phiX174 3300 3310 513230.77 -phiX174 3310 3320 529269.23 -phiX174 3320 3330 609461.54 -phiX174 3330 3340 657576.92 -phiX174 3340 3370 641538.46 -phiX174 3370 3390 657576.92 -phiX174 3390 3400 577384.62 -phiX174 3400 3430 481153.85 -phiX174 3430 3440 513230.77 -phiX174 3440 3450 609461.54 -phiX174 3450 3460 577384.62 -phiX174 3460 3480 673615.38 -phiX174 3480 3490 721730.77 -phiX174 3490 3500 834000.00 -phiX174 3500 3510 801923.08 -phiX174 3510 3520 898153.85 -phiX174 3520 3530 769846.15 -phiX174 3530 3540 753807.69 -phiX174 3540 3550 785884.62 -phiX174 3550 3560 753807.69 -phiX174 3560 3570 689653.85 -phiX174 3570 3580 497192.31 -phiX174 3580 3590 465115.38 -phiX174 3590 3610 433038.46 -phiX174 3610 3620 417000.00 -phiX174 3620 3630 400961.54 -phiX174 3630 3640 384923.08 -phiX174 3640 3650 352846.15 -phiX174 3650 3660 433038.46 -phiX174 3660 3680 400961.54 -phiX174 3680 3690 417000.00 -phiX174 3690 3700 336807.69 -phiX174 3700 3710 384923.08 -phiX174 3710 3720 433038.46 -phiX174 3720 3730 625500.00 -phiX174 3730 3740 593423.08 -phiX174 3740 3750 705692.31 -phiX174 3750 3760 673615.38 -phiX174 3760 3780 657576.92 -phiX174 3780 3790 625500.00 -phiX174 3790 3800 497192.31 -phiX174 3800 3810 417000.00 -phiX174 3810 3820 449076.92 -phiX174 3820 3830 433038.46 -phiX174 3830 3840 545307.69 -phiX174 3840 3850 625500.00 -phiX174 3850 3860 769846.15 -phiX174 3860 3870 801923.08 -phiX174 3870 3880 769846.15 -phiX174 3880 3890 721730.77 -phiX174 3890 3900 673615.38 -phiX174 3900 3910 641538.46 -phiX174 3910 3920 593423.08 -phiX174 3920 3930 449076.92 -phiX174 3930 3950 400961.54 -phiX174 3950 3960 433038.46 -phiX174 3960 3970 529269.23 -phiX174 3970 3980 593423.08 -phiX174 3980 3990 561346.15 -phiX174 3990 4000 641538.46 -phiX174 4000 4010 625500.00 -phiX174 4010 4020 609461.54 -phiX174 4020 4030 641538.46 -phiX174 4030 4040 657576.92 -phiX174 4040 4050 545307.69 -phiX174 4050 4060 481153.85 -phiX174 4060 4070 449076.92 -phiX174 4070 4080 400961.54 -phiX174 4080 4090 433038.46 -phiX174 4090 4100 529269.23 -phiX174 4100 4110 400961.54 -phiX174 4110 4120 368884.62 -phiX174 4120 4130 304730.77 -phiX174 4130 4150 368884.62 -phiX174 4150 4160 336807.69 -phiX174 4160 4170 384923.08 -phiX174 4170 4180 272653.85 -phiX174 4180 4190 336807.69 -phiX174 4190 4200 352846.15 -phiX174 4200 4210 368884.62 -phiX174 4210 4230 320769.23 -phiX174 4230 4250 336807.69 -phiX174 4250 4260 384923.08 -phiX174 4260 4280 481153.85 -phiX174 4280 4290 449076.92 -phiX174 4290 4300 465115.38 -phiX174 4300 4310 529269.23 -phiX174 4310 4320 609461.54 -phiX174 4320 4330 577384.62 -phiX174 4330 4340 465115.38 -phiX174 4340 4350 417000.00 -phiX174 4350 4360 433038.46 -phiX174 4360 4380 513230.77 -phiX174 4380 4390 481153.85 -phiX174 4390 4400 449076.92 -phiX174 4400 4410 529269.23 -phiX174 4410 4420 657576.92 -phiX174 4420 4430 705692.31 -phiX174 4430 4440 785884.62 -phiX174 4440 4450 817961.54 -phiX174 4450 4460 801923.08 -phiX174 4460 4470 769846.15 -phiX174 4470 4480 882115.38 -phiX174 4480 4490 689653.85 -phiX174 4490 4500 625500.00 -phiX174 4500 4510 609461.54 -phiX174 4510 4520 465115.38 -phiX174 4520 4540 433038.46 -phiX174 4540 4550 497192.31 -phiX174 4550 4560 481153.85 -phiX174 4560 4570 433038.46 -phiX174 4570 4580 465115.38 -phiX174 4580 4590 417000.00 -phiX174 4590 4600 433038.46 -phiX174 4600 4610 529269.23 -phiX174 4610 4620 513230.77 -phiX174 4620 4630 577384.62 -phiX174 4630 4640 609461.54 -phiX174 4640 4660 689653.85 -phiX174 4660 4670 721730.77 -phiX174 4670 4680 673615.38 -phiX174 4680 4690 609461.54 -phiX174 4690 4700 689653.85 -phiX174 4700 4720 481153.85 -phiX174 4720 4730 400961.54 -phiX174 4730 4740 465115.38 -phiX174 4740 4760 561346.15 -phiX174 4760 4780 593423.08 -phiX174 4780 4790 609461.54 -phiX174 4790 4800 689653.85 -phiX174 4800 4810 673615.38 -phiX174 4810 4820 657576.92 -phiX174 4820 4830 593423.08 -phiX174 4830 4850 625500.00 -phiX174 4850 4860 577384.62 -phiX174 4860 4870 513230.77 -phiX174 4870 4880 497192.31 -phiX174 4880 4890 593423.08 -phiX174 4890 4900 513230.77 -phiX174 4900 4910 481153.85 -phiX174 4910 4920 417000.00 -phiX174 4920 4930 384923.08 -phiX174 4930 4950 352846.15 -phiX174 4950 4960 272653.85 -phiX174 4960 4970 176423.08 -phiX174 4970 4980 240576.92 -phiX174 4980 4990 208500.00 -phiX174 4990 5020 288692.31 -phiX174 5020 5030 352846.15 -phiX174 5030 5040 336807.69 -phiX174 5040 5050 368884.62 -phiX174 5050 5060 304730.77 -phiX174 5060 5070 288692.31 -phiX174 5070 5080 240576.92 -phiX174 5080 5090 304730.77 -phiX174 5090 5100 272653.85 -phiX174 5100 5110 224538.46 -phiX174 5110 5120 256615.38 -phiX174 5120 5130 320769.23 -phiX174 5130 5140 417000.00 -phiX174 5140 5160 497192.31 -phiX174 5160 5170 481153.85 -phiX174 5170 5180 577384.62 -phiX174 5180 5190 561346.15 -phiX174 5190 5200 529269.23 -phiX174 5200 5210 465115.38 -phiX174 5210 5220 449076.92 -phiX174 5220 5230 400961.54 -phiX174 5230 5240 449076.92 -phiX174 5240 5250 368884.62 -phiX174 5250 5260 272653.85 -phiX174 5260 5270 304730.77 -phiX174 5270 5280 336807.69 -phiX174 5280 5290 272653.85 -phiX174 5290 5300 192461.54 -phiX174 5300 5310 144346.15 -phiX174 5310 5340 96230.77 -phiX174 5340 5350 64153.85 -phiX174 5350 5386 32076.9 +phiX174 0 10 16302.83 +phiX174 10 20 48908.50 +phiX174 20 70 146725.49 +phiX174 70 80 195633.98 +phiX174 80 90 179331.15 +phiX174 90 100 163028.32 +phiX174 100 120 114119.82 +phiX174 120 140 146725.49 +phiX174 140 150 163028.32 +phiX174 150 160 130422.65 +phiX174 160 170 163028.32 +phiX174 170 180 179331.15 +phiX174 180 200 211936.81 +phiX174 200 210 195633.98 +phiX174 210 220 244542.48 +phiX174 220 230 277148.14 +phiX174 230 240 342359.47 +phiX174 240 250 326056.64 +phiX174 250 260 293450.97 +phiX174 260 270 342359.47 +phiX174 270 280 407570.79 +phiX174 280 300 423873.63 +phiX174 300 310 358662.30 +phiX174 310 320 326056.64 +phiX174 320 330 374965.13 +phiX174 330 340 358662.30 +phiX174 340 350 293450.97 +phiX174 350 360 260845.31 +phiX174 360 370 228239.64 +phiX174 370 380 244542.48 +phiX174 380 390 309753.80 +phiX174 390 400 260845.31 +phiX174 400 410 244542.48 +phiX174 410 420 228239.64 +phiX174 420 450 293450.97 +phiX174 450 460 309753.80 +phiX174 460 470 342359.47 +phiX174 470 490 423873.63 +phiX174 490 510 505387.79 +phiX174 510 520 472782.12 +phiX174 520 530 570599.11 +phiX174 530 540 505387.79 +phiX174 540 550 537993.45 +phiX174 550 560 554296.28 +phiX174 560 570 652113.27 +phiX174 570 580 635810.44 +phiX174 580 590 570599.11 +phiX174 590 600 619507.61 +phiX174 600 610 554296.28 +phiX174 610 630 635810.44 +phiX174 630 640 586901.94 +phiX174 640 650 521690.62 +phiX174 650 660 554296.28 +phiX174 660 670 570599.11 +phiX174 670 680 603204.78 +phiX174 680 690 668416.10 +phiX174 690 700 652113.27 +phiX174 700 710 570599.11 +phiX174 710 730 603204.78 +phiX174 730 740 521690.62 +phiX174 740 760 603204.78 +phiX174 760 770 505387.79 +phiX174 770 780 521690.62 +phiX174 780 790 537993.45 +phiX174 790 800 554296.28 +phiX174 800 810 456479.29 +phiX174 810 820 440176.46 +phiX174 820 830 374965.13 +phiX174 830 840 326056.64 +phiX174 840 850 358662.30 +phiX174 850 860 309753.80 +phiX174 860 870 342359.47 +phiX174 870 880 260845.31 +phiX174 880 890 358662.30 +phiX174 890 900 391267.96 +phiX174 900 910 472782.12 +phiX174 910 920 554296.28 +phiX174 920 930 570599.11 +phiX174 930 940 554296.28 +phiX174 940 950 586901.94 +phiX174 950 960 603204.78 +phiX174 960 970 521690.62 +phiX174 970 980 489084.95 +phiX174 980 990 440176.46 +phiX174 990 1000 423873.63 +phiX174 1000 1010 456479.29 +phiX174 1010 1030 586901.94 +phiX174 1030 1040 766233.09 +phiX174 1040 1050 798838.76 +phiX174 1050 1060 831444.42 +phiX174 1060 1070 880352.92 +phiX174 1070 1080 847747.25 +phiX174 1080 1090 880352.92 +phiX174 1090 1100 782535.93 +phiX174 1100 1110 749930.26 +phiX174 1110 1120 668416.10 +phiX174 1120 1130 652113.27 +phiX174 1130 1140 635810.44 +phiX174 1140 1150 684718.93 +phiX174 1150 1160 635810.44 +phiX174 1160 1170 603204.78 +phiX174 1170 1180 619507.61 +phiX174 1180 1190 586901.94 +phiX174 1190 1200 521690.62 +phiX174 1200 1210 489084.95 +phiX174 1210 1220 570599.11 +phiX174 1220 1230 489084.95 +phiX174 1230 1240 456479.29 +phiX174 1240 1250 358662.30 +phiX174 1250 1260 342359.47 +phiX174 1260 1270 407570.79 +phiX174 1270 1280 358662.30 +phiX174 1280 1290 374965.13 +phiX174 1290 1300 326056.64 +phiX174 1300 1310 391267.96 +phiX174 1310 1320 521690.62 +phiX174 1320 1330 505387.79 +phiX174 1330 1340 521690.62 +phiX174 1340 1350 489084.95 +phiX174 1350 1370 505387.79 +phiX174 1370 1390 472782.12 +phiX174 1390 1400 358662.30 +phiX174 1400 1410 456479.29 +phiX174 1410 1430 489084.95 +phiX174 1430 1450 554296.28 +phiX174 1450 1460 570599.11 +phiX174 1460 1470 586901.94 +phiX174 1470 1480 619507.61 +phiX174 1480 1490 603204.78 +phiX174 1490 1500 554296.28 +phiX174 1500 1510 668416.10 +phiX174 1510 1520 635810.44 +phiX174 1520 1540 798838.76 +phiX174 1540 1550 733627.43 +phiX174 1550 1570 766233.09 +phiX174 1570 1580 782535.93 +phiX174 1580 1590 684718.93 +phiX174 1590 1600 635810.44 +phiX174 1600 1610 570599.11 +phiX174 1610 1620 537993.45 +phiX174 1620 1630 505387.79 +phiX174 1630 1640 472782.12 +phiX174 1640 1650 489084.95 +phiX174 1650 1660 505387.79 +phiX174 1660 1670 537993.45 +phiX174 1670 1680 603204.78 +phiX174 1680 1690 521690.62 +phiX174 1690 1700 537993.45 +phiX174 1700 1710 603204.78 +phiX174 1710 1720 554296.28 +phiX174 1720 1730 537993.45 +phiX174 1730 1740 586901.94 +phiX174 1740 1750 537993.45 +phiX174 1750 1760 440176.46 +phiX174 1760 1770 423873.63 +phiX174 1770 1780 374965.13 +phiX174 1780 1790 358662.30 +phiX174 1790 1810 342359.47 +phiX174 1810 1820 326056.64 +phiX174 1820 1830 472782.12 +phiX174 1830 1860 717324.60 +phiX174 1860 1870 815141.59 +phiX174 1870 1880 749930.26 +phiX174 1880 1890 684718.93 +phiX174 1890 1900 717324.60 +phiX174 1900 1910 619507.61 +phiX174 1910 1920 407570.79 +phiX174 1920 1930 472782.12 +phiX174 1930 1940 554296.28 +phiX174 1940 1950 456479.29 +phiX174 1950 1960 489084.95 +phiX174 1960 1970 537993.45 +phiX174 1970 1980 684718.93 +phiX174 1980 1990 652113.27 +phiX174 1990 2000 668416.10 +phiX174 2000 2010 684718.93 +phiX174 2010 2020 652113.27 +phiX174 2020 2030 668416.10 +phiX174 2030 2050 684718.93 +phiX174 2050 2060 489084.95 +phiX174 2060 2070 521690.62 +phiX174 2070 2080 489084.95 +phiX174 2080 2100 521690.62 +phiX174 2100 2110 537993.45 +phiX174 2110 2120 521690.62 +phiX174 2120 2130 537993.45 +phiX174 2130 2140 554296.28 +phiX174 2140 2150 521690.62 +phiX174 2150 2160 554296.28 +phiX174 2160 2170 423873.63 +phiX174 2170 2180 358662.30 +phiX174 2180 2190 440176.46 +phiX174 2190 2200 456479.29 +phiX174 2200 2210 440176.46 +phiX174 2210 2220 489084.95 +phiX174 2220 2230 554296.28 +phiX174 2230 2240 603204.78 +phiX174 2240 2250 635810.44 +phiX174 2250 2260 733627.43 +phiX174 2260 2270 635810.44 +phiX174 2270 2290 603204.78 +phiX174 2290 2300 619507.61 +phiX174 2300 2310 749930.26 +phiX174 2310 2320 782535.93 +phiX174 2320 2330 880352.92 +phiX174 2330 2340 864050.08 +phiX174 2340 2350 912958.58 +phiX174 2350 2360 815141.59 +phiX174 2360 2370 929261.41 +phiX174 2370 2380 815141.59 +phiX174 2380 2390 652113.27 +phiX174 2390 2400 603204.78 +phiX174 2400 2410 423873.63 +phiX174 2410 2420 407570.79 +phiX174 2420 2430 358662.30 +phiX174 2430 2440 489084.95 +phiX174 2440 2450 456479.29 +phiX174 2450 2460 619507.61 +phiX174 2460 2470 684718.93 +phiX174 2470 2480 749930.26 +phiX174 2480 2490 766233.09 +phiX174 2490 2500 782535.93 +phiX174 2500 2510 798838.76 +phiX174 2510 2520 652113.27 +phiX174 2520 2530 668416.10 +phiX174 2530 2540 537993.45 +phiX174 2540 2550 472782.12 +phiX174 2550 2560 391267.96 +phiX174 2560 2570 440176.46 +phiX174 2570 2590 472782.12 +phiX174 2590 2600 456479.29 +phiX174 2600 2620 537993.45 +phiX174 2620 2630 554296.28 +phiX174 2630 2640 701021.77 +phiX174 2640 2650 635810.44 +phiX174 2650 2660 570599.11 +phiX174 2660 2670 554296.28 +phiX174 2670 2680 619507.61 +phiX174 2680 2700 668416.10 +phiX174 2700 2710 635810.44 +phiX174 2710 2720 603204.78 +phiX174 2720 2740 668416.10 +phiX174 2740 2750 831444.42 +phiX174 2750 2760 880352.92 +phiX174 2760 2770 864050.08 +phiX174 2770 2780 896655.75 +phiX174 2780 2790 978169.91 +phiX174 2790 2800 831444.42 +phiX174 2800 2810 847747.25 +phiX174 2810 2820 815141.59 +phiX174 2820 2830 684718.93 +phiX174 2830 2840 717324.60 +phiX174 2840 2860 635810.44 +phiX174 2860 2870 619507.61 +phiX174 2870 2880 717324.60 +phiX174 2880 2890 668416.10 +phiX174 2890 2900 619507.61 +phiX174 2900 2910 668416.10 +phiX174 2910 2930 570599.11 +phiX174 2930 2940 521690.62 +phiX174 2940 2950 570599.11 +phiX174 2950 2960 505387.79 +phiX174 2960 2970 586901.94 +phiX174 2970 2980 603204.78 +phiX174 2980 2990 521690.62 +phiX174 2990 3000 537993.45 +phiX174 3000 3010 570599.11 +phiX174 3010 3020 521690.62 +phiX174 3020 3030 472782.12 +phiX174 3030 3040 440176.46 +phiX174 3040 3050 423873.63 +phiX174 3050 3060 554296.28 +phiX174 3060 3070 570599.11 +phiX174 3070 3080 635810.44 +phiX174 3080 3100 586901.94 +phiX174 3100 3110 733627.43 +phiX174 3110 3120 684718.93 +phiX174 3120 3130 652113.27 +phiX174 3130 3140 619507.61 +phiX174 3140 3160 684718.93 +phiX174 3160 3180 782535.93 +phiX174 3180 3190 717324.60 +phiX174 3190 3200 668416.10 +phiX174 3200 3210 684718.93 +phiX174 3210 3220 749930.26 +phiX174 3220 3230 668416.10 +phiX174 3230 3240 717324.60 +phiX174 3240 3250 635810.44 +phiX174 3250 3260 554296.28 +phiX174 3260 3270 603204.78 +phiX174 3270 3280 635810.44 +phiX174 3280 3290 586901.94 +phiX174 3290 3300 537993.45 +phiX174 3300 3310 521690.62 +phiX174 3310 3320 537993.45 +phiX174 3320 3330 619507.61 +phiX174 3330 3340 668416.10 +phiX174 3340 3370 652113.27 +phiX174 3370 3390 668416.10 +phiX174 3390 3400 586901.94 +phiX174 3400 3430 489084.95 +phiX174 3430 3440 521690.62 +phiX174 3440 3450 619507.61 +phiX174 3450 3460 586901.94 +phiX174 3460 3480 684718.93 +phiX174 3480 3490 733627.43 +phiX174 3490 3500 847747.25 +phiX174 3500 3510 815141.59 +phiX174 3510 3520 912958.58 +phiX174 3520 3530 782535.93 +phiX174 3530 3540 766233.09 +phiX174 3540 3550 798838.76 +phiX174 3550 3560 766233.09 +phiX174 3560 3570 701021.77 +phiX174 3570 3580 505387.79 +phiX174 3580 3590 472782.12 +phiX174 3590 3610 440176.46 +phiX174 3610 3620 423873.63 +phiX174 3620 3630 407570.79 +phiX174 3630 3640 391267.96 +phiX174 3640 3650 358662.30 +phiX174 3650 3660 440176.46 +phiX174 3660 3680 407570.79 +phiX174 3680 3690 423873.63 +phiX174 3690 3700 342359.47 +phiX174 3700 3710 391267.96 +phiX174 3710 3720 440176.46 +phiX174 3720 3730 635810.44 +phiX174 3730 3740 603204.78 +phiX174 3740 3750 717324.60 +phiX174 3750 3760 684718.93 +phiX174 3760 3780 668416.10 +phiX174 3780 3790 635810.44 +phiX174 3790 3800 505387.79 +phiX174 3800 3810 423873.63 +phiX174 3810 3820 456479.29 +phiX174 3820 3830 440176.46 +phiX174 3830 3840 554296.28 +phiX174 3840 3850 635810.44 +phiX174 3850 3860 782535.93 +phiX174 3860 3870 815141.59 +phiX174 3870 3880 782535.93 +phiX174 3880 3890 733627.43 +phiX174 3890 3900 684718.93 +phiX174 3900 3910 652113.27 +phiX174 3910 3920 603204.78 +phiX174 3920 3930 456479.29 +phiX174 3930 3950 407570.79 +phiX174 3950 3960 440176.46 +phiX174 3960 3970 537993.45 +phiX174 3970 3980 603204.78 +phiX174 3980 3990 570599.11 +phiX174 3990 4000 652113.27 +phiX174 4000 4010 635810.44 +phiX174 4010 4020 619507.61 +phiX174 4020 4030 652113.27 +phiX174 4030 4040 668416.10 +phiX174 4040 4050 554296.28 +phiX174 4050 4060 489084.95 +phiX174 4060 4070 456479.29 +phiX174 4070 4080 407570.79 +phiX174 4080 4090 440176.46 +phiX174 4090 4100 537993.45 +phiX174 4100 4110 407570.79 +phiX174 4110 4120 374965.13 +phiX174 4120 4130 309753.80 +phiX174 4130 4150 374965.13 +phiX174 4150 4160 342359.47 +phiX174 4160 4170 391267.96 +phiX174 4170 4180 277148.14 +phiX174 4180 4190 342359.47 +phiX174 4190 4200 358662.30 +phiX174 4200 4210 374965.13 +phiX174 4210 4230 326056.64 +phiX174 4230 4250 342359.47 +phiX174 4250 4260 391267.96 +phiX174 4260 4280 489084.95 +phiX174 4280 4290 456479.29 +phiX174 4290 4300 472782.12 +phiX174 4300 4310 537993.45 +phiX174 4310 4320 619507.61 +phiX174 4320 4330 586901.94 +phiX174 4330 4340 472782.12 +phiX174 4340 4350 423873.63 +phiX174 4350 4360 440176.46 +phiX174 4360 4380 521690.62 +phiX174 4380 4390 489084.95 +phiX174 4390 4400 456479.29 +phiX174 4400 4410 537993.45 +phiX174 4410 4420 668416.10 +phiX174 4420 4430 717324.60 +phiX174 4430 4440 798838.76 +phiX174 4440 4450 831444.42 +phiX174 4450 4460 815141.59 +phiX174 4460 4470 782535.93 +phiX174 4470 4480 798838.76 +phiX174 4480 4490 701021.77 +phiX174 4490 4500 635810.44 +phiX174 4500 4510 619507.61 +phiX174 4510 4520 472782.12 +phiX174 4520 4540 440176.46 +phiX174 4540 4550 505387.79 +phiX174 4550 4560 489084.95 +phiX174 4560 4570 440176.46 +phiX174 4570 4580 472782.12 +phiX174 4580 4590 423873.63 +phiX174 4590 4600 440176.46 +phiX174 4600 4610 537993.45 +phiX174 4610 4620 521690.62 +phiX174 4620 4630 586901.94 +phiX174 4630 4640 619507.61 +phiX174 4640 4660 701021.77 +phiX174 4660 4670 733627.43 +phiX174 4670 4680 684718.93 +phiX174 4680 4690 619507.61 +phiX174 4690 4700 701021.77 +phiX174 4700 4720 489084.95 +phiX174 4720 4730 407570.79 +phiX174 4730 4740 472782.12 +phiX174 4740 4760 570599.11 +phiX174 4760 4780 603204.78 +phiX174 4780 4790 619507.61 +phiX174 4790 4800 701021.77 +phiX174 4800 4810 684718.93 +phiX174 4810 4820 668416.10 +phiX174 4820 4830 603204.78 +phiX174 4830 4850 635810.44 +phiX174 4850 4860 586901.94 +phiX174 4860 4870 521690.62 +phiX174 4870 4880 505387.79 +phiX174 4880 4890 603204.78 +phiX174 4890 4900 521690.62 +phiX174 4900 4910 489084.95 +phiX174 4910 4920 423873.63 +phiX174 4920 4930 391267.96 +phiX174 4930 4950 358662.30 +phiX174 4950 4960 277148.14 +phiX174 4960 4970 179331.15 +phiX174 4970 4980 244542.48 +phiX174 4980 4990 211936.81 +phiX174 4990 5020 293450.97 +phiX174 5020 5030 358662.30 +phiX174 5030 5040 342359.47 +phiX174 5040 5050 374965.13 +phiX174 5050 5060 309753.80 +phiX174 5060 5070 293450.97 +phiX174 5070 5080 244542.48 +phiX174 5080 5090 309753.80 +phiX174 5090 5100 277148.14 +phiX174 5100 5110 228239.64 +phiX174 5110 5120 260845.31 +phiX174 5120 5130 326056.64 +phiX174 5130 5140 423873.63 +phiX174 5140 5160 505387.79 +phiX174 5160 5170 489084.95 +phiX174 5170 5180 586901.94 +phiX174 5180 5190 570599.11 +phiX174 5190 5200 537993.45 +phiX174 5200 5210 472782.12 +phiX174 5210 5220 456479.29 +phiX174 5220 5230 407570.79 +phiX174 5230 5240 456479.29 +phiX174 5240 5250 374965.13 +phiX174 5250 5260 277148.14 +phiX174 5260 5270 309753.80 +phiX174 5270 5280 342359.47 +phiX174 5280 5290 277148.14 +phiX174 5290 5300 195633.98 +phiX174 5300 5310 146725.49 +phiX174 5310 5340 97816.99 +phiX174 5340 5350 65211.33 +phiX174 5350 5386 32605.66
--- a/test-data/bamPEFragmentSize_result1.txt Fri May 13 16:59:57 2016 -0400 +++ b/test-data/bamPEFragmentSize_result1.txt Thu Aug 11 06:27:13 2016 -0400 @@ -1,6 +1,8 @@ + + +BAM file : 0.bam Sample size: 3 - Fragment lengths: Min.: 241.0 1st Qu.: 241.5
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/plotEnrichment_output.txt Thu Aug 11 06:27:13 2016 -0400 @@ -0,0 +1,5 @@ +file featureType percent +bowtie2 test1.bam down 100.00 +bowtie2 test1.bam up 100.00 +bowtie2 test1.bam down 100.00 +bowtie2 test1.bam up 100.00
--- a/test-data/plotFingerprint_result2.tabular Fri May 13 16:59:57 2016 -0400 +++ b/test-data/plotFingerprint_result2.tabular Thu Aug 11 06:27:13 2016 -0400 @@ -1,239 +1,239 @@ 'bowtie2 test1.bam' 'bowtie2 test1.bam' -68 68 -65 65 -61 61 -57 57 -43 43 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -37 37 -35 35 -35 35 -35 35 -35 35 -35 35 -35 35 -35 35 -35 35 -35 35 -35 35 -35 35 -35 35 -29 29 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +35 35 +33 33 +33 33 +33 33 +33 33 +33 33 +33 33 +33 33 +33 33 +33 33 +33 33 +33 33 +33 33 27 27 -26 26 -22 22 +25 25 +24 24 21 21 20 20 -20 20 +19 19 +19 19 19 19 17 17 17 17