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annotate deepTools_macros.xml @ 0:3d29a3c9cdab draft

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planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
author bgruening
date Wed, 16 Dec 2015 16:39:07 -0500
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children 4935689a29ab
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1 <macros>
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2
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3 <xml name="advancedOpt_scaffold">
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4 <conditional name="advancedOpt">
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5 <param name="showAdvancedOpt" type="select" label="Show advanced options" >
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6 <option value="no" selected="true">no</option>
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7 <option value="yes">yes</option>
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8 </param>
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9 <when value="no" />
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10 <when value="yes">
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11 <yield/>
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12 </when>
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13 </conditional>
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14 </xml>
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15
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16 <token name="@ADVANCED_OPTS_READ_PROCESSING@">
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17 --extendReads $advancedOpt.extendReads
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18 $advancedOpt.ignoreDuplicates
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19 $advancedOpt.centerReads
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20 #if $advancedOpt.minMappingQuality:
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21 --minMappingQuality '$advancedOpt.minMappingQuality'
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22 #end if
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23 #if $advancedOpt.samFlagInclude:
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24 --samFlagInclude $advancedOpt.samFlagInclude
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25 #end if
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26 #if $advancedOpt.samFlagExclude:
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27 --samFlagExclude $advancedOpt.samFlagExclude
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28 #end if
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29 </token>
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30
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31 <xml name="heatmap_options">
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32 <expand macro="zMin_zMax" />
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33 <expand macro="colorMap" />
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34 <expand macro="plotTitle" />
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35 <expand macro="plotNumbers" />
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36 </xml>
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37
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38 <token name="@HEATMAP_OPTIONS@">
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39 #if $zMin:
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40 --zMin $zMin
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41 #end if
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42 #if $zMax:
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43 --zMax $zMax
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44 #end if
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45 --colorMap '$colorMap'
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46 $plotNumbers
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47 </token>
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48
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49 <expand macro="plotTitle" />
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50 <expand macro="plotNumbers" />
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51 <conditional name="output">
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52 <param name="showOutputSettings" type="select" label="Show advanced output settings" >
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53 <option value="no" selected="true">no</option>
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54 <option value="yes">yes</option>
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55 </param>
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56 <when value="no" />
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57 <when value="yes">
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58 <expand macro="input_image_file_format"/>
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59 <param name="saveRawCounts" type="boolean" label="Save the bin counts"/>
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60 <param name="saveCorMatrix" type="boolean" label="Save the correlation matrix"/>
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61 </when>
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62 </conditional>
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63
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64 <!--
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65 $mode.advancedOpt.includeZeros
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66
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67
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68 #if $plotTitle and str($plotTitle).strip() != "":
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69 - -plotTitle '$plotTitle'
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70 #end if
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71
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72
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73 -->
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74
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75 <xml name="bigwigCorrelate_mode_actions">
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76 <expand macro="region_limit_operation" />
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77
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78 <conditional name="advancedOpt">
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79 <param name="showAdvancedOpt" type="select" label="Show advanced options" >
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80 <option value="no" selected="true">no</option>
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81 <option value="yes">yes</option>
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82 </param>
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83 <when value="no" />
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84 <when value="yes">
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85 <expand macro="includeZeros" />
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86 <expand macro="zMin_zMax" />
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87 <expand macro="colorMap" />
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88 <expand macro="plotTitle" />
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89 <expand macro="plotNumbers" />
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90 </when>
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91 </conditional>
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92 </xml>
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93
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94 <xml name="includeZeros">
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95 <param argument="--includeZeros" type="boolean" truevalue="--includeZeros" falsevalue=""
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96 label="Include zeros"
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97 help="If set, then regions with zero counts for *all* BAM files given are included. The default behavior is to ignore those cases." />
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98 </xml>
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99
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100 <xml name="zMin_zMax">
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101 <param argument="--zMin" type="integer" value="" optional="true" label="Minimum value for the heatmap intensities"
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102 help="If not specified the value is set automatically."/>
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103 <param argument="--zMax" type="integer" value="" optional="true" label="Maximum value for the heatmap intensities"
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104 help="If not specified the value is set automatically."/>
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105 </xml>
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106
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107 <xml name="region_limit_operation">
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108 <param argument="--region" type="text" value=""
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109 label="Region of the genome to limit the operation to"
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110 help="This is useful when testing parameters to reduce the computing time. The format is chr:start:end, for example &quot;chr10&quot; or &quot;chr10:456700:891000&quot;." />
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111 </xml>
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112
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113 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
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114 <token name="@WRAPPER_VERSION@">1.5.11</token>
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115 <xml name="requirements">
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116 <requirements>
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117 <requirement type="package" version="2.7.10">python</requirement>
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118 <requirement type="binary">@BINARY@</requirement>
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119 <requirement type="package" version="2.0">deepTools</requirement>
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120 <yield />
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121 </requirements>
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122 <expand macro="stdio" />
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123 <version_command>@BINARY@ --version</version_command>
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124 </xml>
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125
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126 <xml name="smoothLength">
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127 <param argument="--smoothLength" type="integer" value="" optional="True" min="1"
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128 label="Smooth values using the following length (in bp)"
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129 help ="The smooth length defines a window, larger than the bin size, to average the number of reads. For example, if the bin size is set to 20 bp and the smooth length is set to 60 bp, then, for each bin size the average of it and its left and right neighbors is considered. Any value smaller than the bin size will be ignored and no smoothing will be applied."/>
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130 </xml>
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131
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132
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133 <xml name="kmeans_clustering">
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134 <conditional name="used_multiple_regions">
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135 <param name="used_multiple_regions_options" type="select"
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136 label="Did you compute the matrix with more than one groups of regions?"
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137 help="Would you like to cluster the regions according to the similarity of the signal distribution? This is only possible if you used computeMatrix on only one group of regions.">
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138 <option value="yes">Yes, I used multiple groups of regions</option>
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139 <option value="no">No, I used only one group</option>
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140 </param>
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141 <when value="no">
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142 <conditional name="clustering">
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143 <param name="clustering_options" type="select" label="Clustering algorithm">
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144 <option value="none">No clustering</option>
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145 <option value="kmeans">Kmeans clustering</option>
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146 </param>
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147 <when value="kmeans">
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148 <param name="k_kmeans" type="integer" value="0" label="Number of clusters to compute"
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149 help="When this option is set, then the matrix is split into clusters using the kmeans algorithm. Only works for data that is not grouped, otherwise only the first group will be clustered. If more specific clustering methods are required it is advisable to save the underlying matrix and run the clustering using other software. The plotting of the clustering may fail (Error: Segmentation fault) if a cluster has very few members compared to the total number or regions. (default: None)."/>
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150 </when>
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151 <when value="none" />
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152 </conditional>
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153 </when>
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154 <when value="yes" />
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155 </conditional>
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156 </xml>
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157
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158 <token name="@KMEANS_CLUSTERING@">
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159 #if $advancedOpt.used_multiple_regions.used_multiple_regions_options == 'no':
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160 #if $advancedOpt.used_multiple_regions.clustering.clustering_options == 'kmeans':
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161 #if int($advancedOpt.used_multiple_regions.clustering.k_kmeans) > 0:
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162 --kmeans $advancedOpt.used_multiple_regions.clustering.k_kmeans
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163 #end if
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164 #end if
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165 #end if
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166 </token>
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167
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168 <xml name="samFlags">
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169 <param argument="--samFlagInclude" type="integer" optional="True" value=""
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170 label="Include reads based on the SAM flag"
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171 help= "For example, to get only reads that are the first mate use a flag of 64. This is useful to count properly paired reads only once, otherwise the second mate will be also considered for the coverage."/>
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172 <param argument="--samFlagExclude" type="integer" optional="True" value=""
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173 label="Exclude reads based on the SAM flag"
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174 help= "For example, to get only reads that map to the forward strand, use --samFlagExclude 16, where 16 is the SAM flag for reads that map to the reverse strand."/>
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175 </xml>
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176
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177 <xml name="read_processing_options">
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178 <expand macro="extendReads" />
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179 <expand macro="ignoreDuplicates" />
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180 <expand macro="centerReads" />
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181 <expand macro="minMappingQuality" />
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182 <expand macro="samFlags" />
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183 </xml>
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184
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185 <xml name="plotNumbers">
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186 <param argument="--plotNumbers" type="boolean" truevalue="--plotNumbers" falsevalue=""
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187 label="Plot the correlation value"
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188 help="If set, then the correlation number is plotted on top of the heatmap."/>
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189 </xml>
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190
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191 <xml name="extendReads">
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192 <param argument="--extendReads" type="integer" value="" optional="True"
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193 label="Extend reads to the given average fragment size"
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194 help="(1) Single-end reads and singletons are extended to match this length. (2) Paired-end reads are extended to match the fragment size, regardless of what is set here.
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195 By default *each* read mate is extended.
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196 This can be modified using the SAM flags (see --samFlagInclude and --samFlagExclude options) to keep only the first or the second mate.
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197 Unmated reads, mate reads that map on different chromosomes or too far apart are extended to the given value.
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198 Reads are only extended if --extendReads is set to a value greater than the read length. *NOTE*: For spliced-read data, this option is not
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199 recommended as it will extend reads over skipped regions, e.g. introns in RNA-seq data."/>
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200 </xml>
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201
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202 <xml name="corMethod">
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203 <param argument="--corMethod" type="select" label="Correlation method">
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204 <option value="spearman" selected="True">Spearman</option>
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205 <option value="pearson">Pearson</option>
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206 </param>
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207 </xml>
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208
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209 <xml name="distanceBetweenBins">
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210 <param argument="--distanceBetweenBins" type="integer" value="0" min="0"
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211 label="Distance between bins"
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212 help="By default, bamCorrelate considers consecutive bins of
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213 the specified 'Bin size'. However, to reduce the
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214 computation time, a larger distance between bins can
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215 by given. Larger distances result in less bins being
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216 considered."/>
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217 </xml>
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218
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219 <xml name="centerReads">
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220 <param argument="--centerReads" type="boolean" truevalue="--centerReads" falsevalue=""
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221 label="Center regions with respect to the fragment length"
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222 help="For paired-end data, the read is centered at the fragment length defined by the two ends of the fragment. For single-end data, the given fragment length is used. This option is useful to get a sharper signal around enriched regions. "/>
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223 </xml>
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224
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225 <xml name="ignoreDuplicates">
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226 <param argument="--ignoreDuplicates" type="boolean" truevalue="--ignoreDuplicates" falsevalue=""
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227 label="Ignore duplicates"
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228 help="If set, reads that have the same orientation and start position will be considered only once. If reads are paired, the mate position also has to coincide to ignore a read." />
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229 </xml>
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230
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231 <xml name="sortUsing">
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232 <param argument="--sortUsing" type="select" label="Method used for sorting"
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233 help="For each row the method is computed.">
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234 <option value="mean" selected="true">mean</option>
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235 <option value="median">median</option>
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236 <option value="min">min</option>
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237 <option value="max">max</option>
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238 <option value="sum">sum</option>
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239 <option value="region_length">region length</option>
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240 </param>
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241 </xml>
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242
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243 <xml name="sortRegions">
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244 <param argument="--sortRegions" type="select" label="Sort regions"
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245 help="Whether the heatmap should present the regions sorted. The default is to sort in descending order based on the mean value per region.">
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246 <option value="no">no ordering</option>
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247 <option value="descend" selected="true">descending order</option>
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248 <option value="ascend">ascending order</option>
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249 </param>
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250 </xml>
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251
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252 <xml name="minMappingQuality">
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253 <param argument="--minMappingQuality" type="integer" optional="true" value="1" min="1"
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254 label="Minimum mapping quality"
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255 help= "If set, only reads that have a mapping quality score higher than the given value are considered. *Note* Bowtie's Mapping quality is related to uniqueness: the higher the score, the more unique is a read. A mapping quality defined by Bowtie of 10 or less indicates that there is at least a 1 in 10 chance that the read truly originated elsewhere."/>
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256 </xml>
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257
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258 <xml name="skipZeros">
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259 <param argument="--skipZeros" type="boolean" truevalue="--skipZeros" falsevalue=""
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260 label ="Skip zeros"
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261 help ="If set, then zero counts that happen for *all* BAM files given are ignored. This might have the effect that fewer regions are considered than indicated in the option where the number of samples is defined." />
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262 </xml>
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263
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264 <xml name="fragmentLength">
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265 <param argument="--fragmentLength" type="integer" value="300" min="1"
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266 label="Fragment length used for the sequencing"
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267 help ="If paired-end reads are used, the fragment length is computed from the BAM file."/>
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268 </xml>
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269
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270 <xml name="scaleFactor">
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271 <param argument="--scaleFactor" type="float" value="1" label="Scaling factor"
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272 help="When used in combination with --normalizeTo1x or
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273 --normalizeUsingRPKM, the computed scaling factor will
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274 be multiplied by the given scale factor." />
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275 </xml>
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276
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277 <xml name="scaleFactors">
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278 <param name="scaleFactor1" type="float" value="1" label="Scale factor for treatment" help="(--scaleFactors)"/>
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279 <param name="scaleFactor2" type="float" value="1" label="Scale factor for input" help="(--scaleFactors)"/>
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280 </xml>
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281
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282 <xml name="stdio">
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283 <stdio>
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284 <exit_code range="1:" />
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285 <exit_code range=":-1" />
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286 <regex match="Error:" />
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287 <regex match="Exception:" />
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288 <regex match="EXception:" />
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289 <regex match="Traceback" />
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290 </stdio>
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291 </xml>
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292
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293 <xml name="pseudocount">
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294 <param argument="--pseudocount" type="float" value="1" label="Pseudocount" help="Small number to avoid dividing by zero."/>
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295 </xml>
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296
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297 <token name="@REFERENCES@">
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298
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299 .. class:: infomark
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300
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301 For more information on the tools, please visit our `help site`_.
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302
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303 If you would like to give us feedback or you run into any trouble, please send an email to deeptools@googlegroups.com
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304
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305 This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_.
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306
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307 .. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/
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308 .. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de
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309 .. _help site: https://github.com/fidelram/deepTools/wiki/
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310
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311 </token>
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312 <xml name="citations">
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313 <citations>
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314 <citation type="doi">10.1093/nar/gku365</citation>
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315 <yield />
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316 </citations>
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317 </xml>
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318
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319 <xml name="multiple_input_bams">
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320 <param argument="--bamfiles" type="data" format="bam"
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321 label="Bam file" multiple="true"
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322 help="The BAM file must be sorted."/>
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323 </xml>
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324
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325 <xml name="multiple_input_bigwigs">
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326 <param argument="--bigwigfiles" type="data" format="bigwig" multiple="True"
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327 label="Bigwig file"
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328 help="The Bigwig file must be sorted."/>
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329 </xml>
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330
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331 <xml name="plotTitle">
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332 <param argument="--plotTitle" type="text" value="" size="30" optional="True"
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333 label="Title of the plot"
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334 help="Title of the plot, to be printed on top of the generated image." />
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335 </xml>
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336
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337 <token name="@multiple_input_bams@">
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338 <![CDATA[
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339 #set files=[]
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340 #set labels=[]
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341 #for $counter, $bamfile in enumerate($bamfiles):
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342 ln -s "${bamfile}" "./${counter}.bam" &&
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343 ln -s "${bamfile.metadata.bam_index}" "./${counter}.bam.bai" &&
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344 #silent $files.append('%s.bam' % $counter)
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345 #silent $labels.append('%s' % ($bamfile.display_name))
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346 #end for
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347 ]]>
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348 </token>
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349
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350 <token name="@multiple_input_bigwigs@">
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351 <![CDATA[
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352 #set files=[]
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353 #set labels=[]
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354 #for $counter, $bigwig in enumerate($bigwigfiles):
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355 ln -s "${bigwig}" "${counter}.bw" &&
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356 #silent $files.append('%s.bw' % $counter)
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357 #silent $labels.append('%s' % ($bigwig.display_name))
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358 #end for
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359 ]]>
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360 </token>
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361
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362 <xml name="reference_genome_source">
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363 <conditional name="source">
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364 <param name="ref_source" type="select" label="Reference genome">
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365 <option value="cached">locally cached</option>
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366 <option value="history">in your history</option>
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367 </param>
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368 <when value="cached">
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369 <param name="input1_2bit" type="select" label="Using reference genome" help="If your genome of interest is not listed, contact the Galaxy team">
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370 <options from_data_table="lastz_seqs">
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371 <filter type="sort_by" column="1" />
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372 <validator type="no_options" message="No indexes are available." />
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373 </options>
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374 </param>
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375 </when>
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376 <when value="history">
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377 <param name="input1" type="data" format="twobit" label="Select a reference dataset in 2bit format" />
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378 </when>
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379 </conditional>
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380 </xml>
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381
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382 <token name="@reference_genome_source@">
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383 #if $source.ref_source=="history":
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384 --genome $source.input1
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385 #else:
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386 --genome "${source.input1_2bit.fields.path}"
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387 #end if
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388 </token>
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389
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390 <xml name="effectiveGenomeSize">
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391 <conditional name="effectiveGenomeSize">
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392 <param name="effectiveGenomeSize_opt" type="select" label="Effective genome size"
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393 help="The effective genome size is the portion of the genome that is mappable. Large fractions of the genome are stretches of NNNN that should be discarded.
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394 Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly.
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395 See Table 2 of http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030377 or http://www.nature.com/nbt/journal/v27/n1/fig_tab/nbt.1518_T1.html for several effective genome sizes.">
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396 <option value="93260000">ce10 (93260000)</option>
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397 <option value="121400000">dm3 (121400000)</option>
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398 <option value="2451960000" selected="true">hg19 (2451960000)</option>
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399 <option value="2150570000">mm9 (2150570000)</option>
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400 <option value="specific">user specified</option>
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401 </param>
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402 <when value="specific">
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403 <param argument="--effectiveGenomeSize" type="integer" value="" label="Effective genome size" help="e.g. ce10: 93260000, dm3: 121400000, hg19: 2451960000, mm9: 2150570000"/>
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404 </when>
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405 <when value="2150570000" />
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406 <when value="2451960000" />
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407 <when value="121400000" />
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408 <when value="93260000" />
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409 </conditional>
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410 </xml>
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411
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412 <xml name="image_file_format">
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413 <param argument="--outFileFormat" type="select" label="Image file format">
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414 <option value="png" selected="true">png</option>
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415 <option value="pdf">pdf</option>
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416 <option value="svg">svg</option>
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417 <option value="eps">eps</option>
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418 </param>
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419 </xml>
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420
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421 <xml name="keepNAs">
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422 <param argument="--keepNAs" type="boolean" truevalue="--keepNAs" falsevalue="" checked="False"
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423 label="Treat missing data as zero"
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424 help="If set, missing data (NAs) will be treated as zeros.
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425 The default is to ignore missing data and not included
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426 in the output file. Missing data is defined as those
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427 bins for which no overlapping reads are found." />
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428 </xml>
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429
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430 <xml name="input_save_matrix_values">
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431 <param argument="--saveMatrix" type="boolean" label="Save the matrix of values underlying the heatmap"/>
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432 </xml>
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433
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434 <xml name="input_graphic_output_settings">
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435 <conditional name="output" >
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436 <param name="showOutputSettings" type="select" label="Show advanced output settings" >
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437 <option value="no" selected="true">no</option>
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438 <option value="yes">yes</option>
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439 </param>
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440 <when value="no" />
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441 <when value="yes">
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442 <yield />
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443 <param name="saveData" type="boolean" label="Save the data underlying the average profile"/>
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444 <param name="saveSortedRegions" type="boolean" label="Save the regions after skipping zeros or min/max threshold values" help="The order of the regions in the file follows the sorting order selected. This is useful, for example, to generate other heatmaps keeping the sorting of the first heatmap."/>
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445 </when>
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446 </conditional>
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447 </xml>
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448
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449 <xml name="input_image_file_format">
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450 <param name="outFileFormat" type="select" label="Image file format">
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451 <option value="png" selected="true">png</option>
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452 <option value="pdf">pdf</option>
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453 <option value="svg">svg</option>
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454 <option value="eps">eps</option>
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455 <option value="emf">emf</option>
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456 </param>
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457 </xml>
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458
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459 <xml name="output_image_file_format">
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460 <data format="png" name="outFileName" label="${tool.name} image">
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461 <change_format>
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462 <when input="output.outFileFormat" value="pdf" format="pdf" />
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463 <when input="output.outFileFormat" value="svg" format="svg" />
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464 <when input="output.outFileFormat" value="eps" format="eps" />
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465 <when input="output.outFileFormat" value="emf" format="emf" />
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466 </change_format>
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467 </data>
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468 </xml>
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469
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470 <xml name="output_save_matrix_values">
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471 <data format="tabular" name="outFileNameMatrix" label="${tool.name} on ${on_string}: Heatmap values">
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472 <filter>
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473 ((
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474 output['showOutputSettings'] == 'yes' and
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475 output['saveMatrix'] is True
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476 ))
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477 </filter>
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478 </data>
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479 </xml>
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480
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481 <xml name="output_graphic_outputs">
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482 <data format="tabular" name="outFileNameData" label="${tool.name} on ${on_string}: averages per matrix column">
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483 <filter>
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484 ((
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485 output['showOutputSettings'] == 'yes' and
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486 output['saveData'] is True
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487 ))
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488 </filter>
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489 </data>
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490 <data format="bed" name="outFileSortedRegions" label="${tool.name} on ${on_string}: sorted/filtered regions">
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491 <filter>
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492 ((
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493 output['showOutputSettings'] == 'yes' and
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494 output['saveSortedRegions'] is True
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495 ))
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496 </filter>
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497 </data>
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498 </xml>
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499
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500 <xml name="colorMap">
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501 <param name="colorMap" type="select" label="Color map to use for the heatmap" help=" Available color map names can be found here: http://www.astro.lsa.umich.edu/~msshin/science/code/matplotlib_cm/">
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502 <option value="RdYlBu" selected="true">RdYlBu</option>
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503 <option value="Accent">Accent</option>
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504 <option value="Spectral">Spectral</option>
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505 <option value="Set1">Set1</option>
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506 <option value="Set2">Set2</option>
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507 <option value="Set3">Set3</option>
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508 <option value="Dark2">Dark2</option>
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509 <option value="Reds">Reds</option>
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510 <option value="Oranges">Oranges</option>
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511 <option value="Greens">Greens</option>
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512 <option value="Blues">Blues</option>
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513 <option value="Greys">Greys</option>
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514 <option value="Purples">Purples</option>
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515 <option value="Paired">Paired</option>
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516 <option value="Pastel1">Pastel1</option>
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517 <option value="Pastel2">Pastel2</option>
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518 <option value="spring">spring</option>
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519 <option value="summer">summer</option>
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520 <option value="autumn">autumn</option>
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521 <option value="winter">winter</option>
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522 <option value="hot">hot</option>
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523 <option value="coolwarm">coolwarm</option>
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524 <option value="cool">cool</option>
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525 <option value="seismic">seismic</option>
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526 <option value="terrain">terrain</option>
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527 <option value="ocean">ocean</option>
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528 <option value="rainbow">rainbow</option>
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529 <option value="bone">bone</option>
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530 <option value="flag">flag</option>
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diff changeset
531 <option value="prism">prism</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
532 <option value="cubehelix">cubehelix</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
533 <option value="binary">binary</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
534 <option value="pink">pink</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
535 <option value="gray">gray</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
536 <option value="copper">copper</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
537 <option value="BrBG">BrBG</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
538 <option value="BuGn">BuGn</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
539 <option value="BuPu">BuPu</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
540 <option value="GnBu">GnBu</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
541 <option value="OrRd">OrRd</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
542 <option value="PiYG">PiYG</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
543 <option value="PRGn">PRGn</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
544 <option value="PuOr">PuOr</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
545 <option value="PuRd">PuRd</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
546 <option value="PuBu">PuBu</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
547 <option value="RdBu">RdBu</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
548 <option value="RdGy">RdGy</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
549 <option value="RdPu">RdPu</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
550 <option value="YlGn">YlGn</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
551 <option value="PuBuGn">PuBuGn</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
552 <option value="RdYlGn">RdYlGn</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
553 <option value="YlGnBu">YlGnBu</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
554 <option value="YlOrBr">YlOrBr</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
555 <option value="YlOrRd">YlOrRd</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
556 <option value="gist_gray">gist_gray</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
557 <option value="gist_stern">gist_stern</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
558 <option value="gist_earth">gist_earth</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
559 <option value="gist_yarg">gist_yarg</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
560 <option value="gist_ncar">gist_ncar</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
561 <option value="gist_rainbow">gist_rainbow</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
562 <option value="gist_heat">gist_heat</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
563 <option value="gnuplot">gnuplot</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
564 <option value="gnuplot2">gnuplot2</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
565 <option value="CMRmap">CMRmap</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
566 <option value="bwr">bwr</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
567 <option value="hsv">hsv</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
568 <option value="brg">brg</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
569 <option value="jet">jet</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
570 <option value="afmhot">afmhot</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
571 <option value="Accent_r">Accent reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
572 <option value="Spectral_r">Spectral reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
573 <option value="Set1_r">Set1 reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
574 <option value="Set2_r">Set2 reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
575 <option value="Set3_r">Set3 reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
576 <option value="Dark2_r">Dark2 reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
577 <option value="Reds_r">Reds reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
578 <option value="Oranges_r">Oranges reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
579 <option value="Greens_r">Greens reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
580 <option value="Blues_r">Blues reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
581 <option value="Greys_r">Greys reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
582 <option value="Purples_r">Purples reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
583 <option value="Paired_r">Paired reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
584 <option value="Pastel1_r">Pastel1 reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
585 <option value="Pastel2_r">Pastel2 reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
586 <option value="spring_r">spring reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
587 <option value="summer_r">summer reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
588 <option value="autumn_r">autumn reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
589 <option value="winter_r">winter reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
590 <option value="hot_r">hot reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
591 <option value="coolwarm_r">coolwarm reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
592 <option value="cool_r">cool reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
593 <option value="seismic_r">seismic reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
594 <option value="terrain_r">terrain reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
595 <option value="ocean_r">ocean reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
596 <option value="rainbow_r">rainbow reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
597 <option value="bone_r">bone reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
598 <option value="flag_r">flag reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
599 <option value="prism_r">prism reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
600 <option value="cubehelix_r">cubehelix reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
601 <option value="binary_r">binary reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
602 <option value="pink_r">pink reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
603 <option value="gray_r">gray reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
604 <option value="copper_r">copper reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
605 <option value="BrBG_r">BrBG reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
606 <option value="BuGn_r">BuGn reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
607 <option value="BuPu_r">BuPu reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
608 <option value="GnBu_r">GnBu reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
609 <option value="OrRd_r">OrRd reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
610 <option value="PiYG_r">PiYG reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
611 <option value="PRGn_r">PRGn reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
612 <option value="PuOr_r">PuOr reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
613 <option value="PuRd_r">PuRd reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
614 <option value="PuBu_r">PuBu reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
615 <option value="RdBu_r">RdBu reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
616 <option value="RdGy_r">RdGy reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
617 <option value="RdPu_r">RdPu reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
618 <option value="YlGn_r">YlGn reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
619 <option value="PuBuGn_r">PuBuGn reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
620 <option value="RdYlBu_r">RdYlBu reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
621 <option value="RdYlGn_r">RdYlGn reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
622 <option value="YlGnBu_r">YlGnBu reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
623 <option value="YlOrBr_r">YlOrBr reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
624 <option value="YlOrRd_r">YlOrRd reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
625 <option value="gist_gray_r">gist_gray reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
626 <option value="gist_stern_r">gist_stern reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
627 <option value="gist_earth_r">gist_earth reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
628 <option value="gist_yarg_r">gist_yarg reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
629 <option value="gist_ncar_r">gist_ncar reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
630 <option value="gist_rainbow_r">gist_rainbow reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
631 <option value="gist_heat_r">gist_heat reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
632 <option value="gnuplot_r">gnuplot reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
633 <option value="gnuplot2_r">gnuplot2 reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
634 <option value="CMRmap_r">CMRmap reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
635 <option value="bwr_r">bwr reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
636 <option value="hsv_r">hsv reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
637 <option value="brg_r">brg reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
638 <option value="jet_r">jet reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
639 <option value="afmhot_r">afmhot reversed</option>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
640 </param>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
641
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
642 </xml>
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
bgruening
parents:
diff changeset
643
3d29a3c9cdab planemo upload for repository https://github.com/fidelram/deepTools/tree/master/galaxy/wrapper/ commit e1fd513c18e0d5b53071d99f539ac3509ced01aa-dirty
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parents:
diff changeset
644 </macros>