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changeset 38:9afae9d021cd draft

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Uploaded
author bgruening
date Sat, 01 Feb 2014 06:12:38 -0500
parents 2f7edf06a5da
children 62786277147a
files deepTools_macros.xml
diffstat 1 files changed, 7 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/deepTools_macros.xml	Sat Feb 01 06:04:58 2014 -0500
+++ b/deepTools_macros.xml	Sat Feb 01 06:12:38 2014 -0500
@@ -187,15 +187,19 @@
                 help="The effective genome size is the portion of the genome that is mappable. Large fractions of the genome are stretches of NNNN that should be discarded. 
                     Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly. 
                     See Table 2 of http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030377 or http://www.nature.com/nbt/journal/v27/n1/fig_tab/nbt.1518_T1.html for several effective genome sizes.">
+                <option value="93260000">ce10 (93260000)</option>
+                <option value="121400000">dm3 (121400000)</option>
+                <option value="2451960000" selected="true">hg19 (2451960000)</option>
                 <option value="2150570000">mm9 (2150570000)</option>
-                <option value="2451960000">hg19 (2451960000)</option>
-                <option value="121400000">dm3 (121400000)</option>
-                <option value="93260000">ce10 (93260000)</option>
                 <option value="specific">user specified</option>
             </param>
             <when value="specific">
                 <param name="effectiveGenomeSize" type="integer" value="" label="Effective genome size" />
             </when>
+            <when value="2150570000" />
+            <when value="2451960000" />
+            <when value="121400000" />
+            <when value="93260000" />
         </conditional>
     </xml>