Mercurial > repos > bgruening > deeptools
diff deepTools_macros.xml @ 40:20f8dafb554f draft
Uploaded
| author | bgruening |
|---|---|
| date | Mon, 03 Feb 2014 12:38:00 -0500 |
| parents | 9afae9d021cd |
| children | c5787c91cab8 |
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--- a/deepTools_macros.xml Sat Feb 01 08:09:18 2014 -0500 +++ b/deepTools_macros.xml Mon Feb 03 12:38:00 2014 -0500 @@ -1,8 +1,7 @@ <macros> <xml name="bamCorrelate_mode_actions"> - <param name="region" type="text" value="" - label="Region of the genome to limit the operation to" - help="This is useful when testing parameters to reduce the computing time. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"" /> + + <expand macro="region_limit_operation" /> <conditional name="advancedOpt"> <param name="showAdvancedOpt" type="select" label="Show advanced options" > @@ -37,6 +36,13 @@ </when> </conditional> </xml> + + <xml name="region_limit_operation"> + <param name="region" type="text" value="" + label="Region of the genome to limit the operation to" + help="This is useful when testing parameters to reduce the computing time. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"" /> + </xml> + <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> <xml name="requirements"> <requirements> @@ -44,7 +50,7 @@ <requirement type="package" >samtools</requirement> <requirement type="package" >deepTools</requirement> <requirement type="package" >ucsc_tools</requirement> - <requirement type="package" version="1.5.4_b2b025a382f00f05c46cabc16d2cbe90dbb5d63a">deepTools</requirement> + <requirement type="package" version="1.5.4_1093b2d281576f23ee04740bd5eae3f7b8422f7e">deepTools</requirement> <requirement type="package" version="0.1">ucsc_tools</requirement> <requirement type="package" version="1.7.1">numpy</requirement> <requirement type="package" version="0.7.7">pysam</requirement>