Mercurial > repos > bgruening > deeptools
comparison deepTools_macros.xml @ 40:20f8dafb554f draft
Uploaded
| author | bgruening |
|---|---|
| date | Mon, 03 Feb 2014 12:38:00 -0500 |
| parents | 9afae9d021cd |
| children | c5787c91cab8 |
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| 39:62786277147a | 40:20f8dafb554f |
|---|---|
| 1 <macros> | 1 <macros> |
| 2 <xml name="bamCorrelate_mode_actions"> | 2 <xml name="bamCorrelate_mode_actions"> |
| 3 <param name="region" type="text" value="" | 3 |
| 4 label="Region of the genome to limit the operation to" | 4 <expand macro="region_limit_operation" /> |
| 5 help="This is useful when testing parameters to reduce the computing time. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"" /> | |
| 6 | 5 |
| 7 <conditional name="advancedOpt"> | 6 <conditional name="advancedOpt"> |
| 8 <param name="showAdvancedOpt" type="select" label="Show advanced options" > | 7 <param name="showAdvancedOpt" type="select" label="Show advanced options" > |
| 9 <option value="no" selected="true">no</option> | 8 <option value="no" selected="true">no</option> |
| 10 <option value="yes">yes</option> | 9 <option value="yes">yes</option> |
| 35 | 34 |
| 36 <expand macro="colormap" /> | 35 <expand macro="colormap" /> |
| 37 </when> | 36 </when> |
| 38 </conditional> | 37 </conditional> |
| 39 </xml> | 38 </xml> |
| 39 | |
| 40 <xml name="region_limit_operation"> | |
| 41 <param name="region" type="text" value="" | |
| 42 label="Region of the genome to limit the operation to" | |
| 43 help="This is useful when testing parameters to reduce the computing time. The format is chr:start:end, for example "chr10" or "chr10:456700:891000"" /> | |
| 44 </xml> | |
| 45 | |
| 40 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> | 46 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token> |
| 41 <xml name="requirements"> | 47 <xml name="requirements"> |
| 42 <requirements> | 48 <requirements> |
| 43 <requirement type="binary">@BINARY@</requirement> | 49 <requirement type="binary">@BINARY@</requirement> |
| 44 <requirement type="package" >samtools</requirement> | 50 <requirement type="package" >samtools</requirement> |
| 45 <requirement type="package" >deepTools</requirement> | 51 <requirement type="package" >deepTools</requirement> |
| 46 <requirement type="package" >ucsc_tools</requirement> | 52 <requirement type="package" >ucsc_tools</requirement> |
| 47 <requirement type="package" version="1.5.4_b2b025a382f00f05c46cabc16d2cbe90dbb5d63a">deepTools</requirement> | 53 <requirement type="package" version="1.5.4_1093b2d281576f23ee04740bd5eae3f7b8422f7e">deepTools</requirement> |
| 48 <requirement type="package" version="0.1">ucsc_tools</requirement> | 54 <requirement type="package" version="0.1">ucsc_tools</requirement> |
| 49 <requirement type="package" version="1.7.1">numpy</requirement> | 55 <requirement type="package" version="1.7.1">numpy</requirement> |
| 50 <requirement type="package" version="0.7.7">pysam</requirement> | 56 <requirement type="package" version="0.7.7">pysam</requirement> |
| 51 <requirement type="package" version="0.12.0">scipy</requirement> | 57 <requirement type="package" version="0.12.0">scipy</requirement> |
| 52 <requirement type="package" version="1.2.1">matplotlib</requirement> | 58 <requirement type="package" version="1.2.1">matplotlib</requirement> |