comparison bamCorrelate.xml @ 37:2f7edf06a5da draft

Uploaded

36:ea2f64efe70d

.. image:: $PATH_TO_IMAGES/QC_bamCorrelate_humanSamples.png
   :alt: Heatmap of RNA Polymerase II ChIP-seq


**Output files**:

- diagnostic plot produced by bamCorrelate is a clustered heatmap displaying the values for each pair-wise correlation, see below for an example
- data matrix (optional) in case you want to plot the correlation values using a different program, e.g. R, this matrix can be used




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.. class:: infomark

@REFERENCES@

    </help>
</tool>

37:2f7edf06a5da

.. image:: $PATH_TO_IMAGES/QC_bamCorrelate_humanSamples.png
   :alt: Heatmap of RNA Polymerase II ChIP-seq


You can find more details in the `bamCorrelate wiki`_.

.. _bamCorrelate wiki: https://github.com/fidelram/deepTools/wiki/Normalizations#wiki-bamCompare


**Output files**:

- diagnostic plot produced by bamCorrelate is a clustered heatmap displaying the values for each pair-wise correlation, see below for an example
- data matrix (optional) in case you want to plot the correlation values using a different program, e.g. R, this matrix can be used


-----

@REFERENCES@

    </help>
</tool>