Mercurial > repos > bgruening > deeptools
comparison bamCorrelate.xml @ 30:2e5b92e7f3cb draft
Uploaded
| author | bgruening |
|---|---|
| date | Tue, 28 Jan 2014 13:54:34 -0500 |
| parents | 60788be7b346 |
| children | fc3830717e24 |
comparison
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| 29:60788be7b346 | 30:2e5b92e7f3cb |
|---|---|
| 37 --numberOfSamples '$mode.numberOfSamples' | 37 --numberOfSamples '$mode.numberOfSamples' |
| 38 #else: | 38 #else: |
| 39 --BED $mode.region_file | 39 --BED $mode.region_file |
| 40 #end if | 40 #end if |
| 41 | 41 |
| 42 ## options available in both modes | 42 #### options available in both modes |
| 43 #if str($mode.region.value) != '': | |
| 44 --region '$mode.region' | |
| 45 #end if | |
| 46 | |
| 43 #if $mode.advancedOpt.showAdvancedOpt == "yes": | 47 #if $mode.advancedOpt.showAdvancedOpt == "yes": |
| 44 | |
| 45 #if str($mode.advancedOpt.region.value) != '': | |
| 46 --region '$mode.advancedOpt.region' | |
| 47 #end if | |
| 48 | 48 |
| 49 $mode.advancedOpt.doNotExtendPairedEnds | 49 $mode.advancedOpt.doNotExtendPairedEnds |
| 50 $mode.advancedOpt.ignoreDuplicates | 50 $mode.advancedOpt.ignoreDuplicates |
| 51 $mode.advancedOpt.includeZeros | 51 $mode.advancedOpt.includeZeros |
| 52 | 52 |