Mercurial > repos > bgruening > deeptools

diff bamCorrelate.xml @ 30:2e5b92e7f3cb draft

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Uploaded
author bgruening
date Tue, 28 Jan 2014 13:54:34 -0500
parents 60788be7b346
children fc3830717e24
line wrap: on
line diff
--- a/bamCorrelate.xml	Sat Dec 21 17:30:26 2013 -0500
+++ b/bamCorrelate.xml	Tue Jan 28 13:54:34 2014 -0500
@@ -39,12 +39,12 @@
             --BED $mode.region_file
         #end if
 
-        ## options available in both modes
-        #if $mode.advancedOpt.showAdvancedOpt == "yes":
+        #### options available in both modes
+        #if str($mode.region.value) != '':
+            --region '$mode.region'
+        #end if
 
-            #if str($mode.advancedOpt.region.value) != '':
-            --region '$mode.advancedOpt.region'
-            #end if
+        #if $mode.advancedOpt.showAdvancedOpt == "yes":
 
             $mode.advancedOpt.doNotExtendPairedEnds
             $mode.advancedOpt.ignoreDuplicates