Mercurial > repos > bgruening > data_manager_diamond_database_builder

changeset 6:ad69009da1b5 draft

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Uploaded
author bgruening
date Sat, 07 Feb 2015 22:39:21 -0500
parents cda0d1859f65
children 52bf3ce034ef
files data_manager/data_manager_diamond_database_builder.py
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_diamond_database_builder.py	Sat Feb 07 22:35:41 2015 -0500
+++ b/data_manager/data_manager_diamond_database_builder.py	Sat Feb 07 22:39:21 2015 -0500
@@ -60,17 +60,17 @@
     COMPRESSED_EXTENSIONS = [ ( '.tar.gz', _get_stream_readers_for_tar ), ( '.tar.bz2', _get_stream_readers_for_tar ), ( '.zip', _get_stream_readers_for_zip ), ( '.fa.gz', _get_stream_readers_for_gzip ), ( '.fa.bz2', _get_stream_readers_for_bz2 ) ]
 
     ncbi_identifier = params['param_dict']['reference_source']['requested_identifier']
-    ftp = FTP( UCSC_FTP_SERVER )
+    ftp = FTP( NCBI_FTP_SERVER )
     ftp.login()
 
-    path_contents = _get_files_in_ftp_path( ftp, UCSC_DOWNLOAD_PATH )
+    path_contents = _get_files_in_ftp_path( ftp, NCBI_DOWNLOAD_PATH )
 
     ucsc_file_name = None
     get_stream_reader = None
     ext = None
     for ext, get_stream_reader in COMPRESSED_EXTENSIONS:
         if "%s%s" % ( ncbi_identifier, ext ) in path_contents:
-            ucsc_file_name = "%s%s%s" % ( UCSC_DOWNLOAD_PATH, ncbi_identifier, ext )
+            ucsc_file_name = "%s%s%s" % ( NCBI_DOWNLOAD_PATH, ncbi_identifier, ext )
             break
 
     if not ucsc_file_name: