changeset 10:4b5cb4328146

Uploaded
author bgruening
date Sat, 11 May 2013 17:31:10 -0400
parents 18617b9fc70e
children 9e2e43fde5fe
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 17 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sat May 11 17:12:34 2013 -0400
+++ b/tool_dependencies.xml	Sat May 11 17:31:10 2013 -0400
@@ -8,23 +8,7 @@
     <package name="matplotlib" version="1.2.1">
         <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_matplotlib_1_2" owner="bgruening" changeset_revision="f2c19c75befd" />
     </package>
-
     <package name="chemfp" version="1.1p1">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://chem-fingerprints.googlecode.com/files/chemfp-1.1p1.tar.gz</action>
-                <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action>
-                <action type="set_environment">
-                    <environment_variable name="PYTHONPATH" action="append_to">$INSTALL_DIR/lib/python</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-        The core chemfp functionality does not depend on a third-party library but you will need a chemistry toolkit in order to generate new fingerprints 
-        from structure files. chemfp supports the free Open Babel and RDKit toolkits and the proprietary OEChem toolkit.
-        Currently the Galaxy-wrappers are using openbabel as underlying toolkit.
-        Compiling chemfp requires gcc and a python2.5+ version.</readme>
+        <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_chemfp_1_1" owner="bgruening" changeset_revision="00e31088ff16" />
     </package>
 </tool_dependency>