comparison bismark_wrapper/tool_dependencies.xml @ 3:678f31a13093 draft

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2:5226800b84ca

        </readme>
    </package>
    <!-- We ship bismark with that wrapper, so we only need to set the PATH variable -->
    <package name="bismark">
        <install version="1.0">
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">./</environment_variable>
                </action>
            </actions>
        </install>

3:678f31a13093

        </readme>
    </package>
    <!-- We ship bismark with that wrapper, so we only need to set the PATH variable -->
    <package name="bismark">
        <install version="1.0">
                <action type="move_file">
                    <source>bismark</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>bismark_genome_preparation</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="move_file">
                    <source>bismark_methylation_extractor</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">./</environment_variable>
                </action>
            </actions>
        </install>