Mercurial > repos > bgruening > bionano_scaffold

annotate macros.xml @ 4:7f96f59e1d5c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 01f4a0a13563b0ae33565ddb26a8fc3a23726e03"
author bgruening
date Sat, 29 May 2021 15:56:53 +0000
parents 4522bc2f7cca
children 06e1f94dcbb4
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
1 <macros>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
2 <token name="@TOOL_VERSION@">3.6.1</token>
4
7f96f59e1d5c "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 01f4a0a13563b0ae33565ddb26a8fc3a23726e03"
bgruening
parents: 3
diff changeset
3 <token name="@GALAXY_TOOL_VERSION@">galaxy2</token>
1
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
4 <token name="@BIONANO_SUPPORT_TEXT@">
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
5 Bionano Genomics has agreed to provide the licensed Bionano Solve
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
6 software to enable the VGP to package the software in a container.
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
7 Bionanno Solve as shipped in this container may not be the latest and
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
8 may not run efficiently on non-validated hardware. Hence, it is not
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
9 supported by Bionano Genomics. Any questions concerning this version
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
10 should be passed to the VGP (https://github.com/VGP/vgp-assembly/issues)
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
11 or Galaxy community (https://help.galaxyproject.org).
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
12 For the latest supported Bionano software, visit Bionano Support
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
13 https://bionanogenomics.com/support/
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
14 </token>
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
15
0
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
16 <xml name="edam_ontology">
1
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
bgruening
parents: 0
diff changeset
17 <edam_topics>
0
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
18 <edam_topic>topic_0196</edam_topic>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
19 </edam_topics>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
20 <edam_operations>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
21 <edam_operation>operation_0525</edam_operation>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
22 </edam_operations>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
23 </xml>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
24 <xml name="requirements">
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
25 <requirements>
3
4522bc2f7cca "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit a3d75aba3a21d88adb3706fbcefcaed4fbcb80fe"
bgruening
parents: 1
diff changeset
26 <container type="docker">quay.io/galaxy/bionano-docker-scaffold:1.6.01-bio</container>
0
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
27 </requirements>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
28 </xml>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
29 <macro name="sanitize_string" >
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
30 <sanitizer invalid_char="">
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
31 <valid initial="string.letters,string.digits">
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
32 </valid>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
33 </sanitizer>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
34 </macro>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
35 <xml name="citations">
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
36 <citations>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
37 <citation type="doi">10.1186/s12864-015-1911-8</citation>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
38 </citations>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
39 </xml>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
bgruening
parents:
diff changeset
40 </macros>