Mercurial > repos > bgruening > bionano_scaffold

annotate macros.xml @ 7:42b12498bfa6 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bionano commit 25785fac3064e7def7ebccd45d452dc0b22ec89a"
author bgruening
date Sat, 05 Feb 2022 18:14:21 +0000
parents 06e1f94dcbb4
children 7ce0622eb07c
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33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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1 <macros>
7
42b12498bfa6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bionano commit 25785fac3064e7def7ebccd45d452dc0b22ec89a"
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2 <token name="@TOOL_VERSION@">3.7.0</token>
42b12498bfa6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bionano commit 25785fac3064e7def7ebccd45d452dc0b22ec89a"
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3 <token name="@VERSION_SUFFIX@">0</token>
1
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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4 <token name="@BIONANO_SUPPORT_TEXT@">
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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5 Bionano Genomics has agreed to provide the licensed Bionano Solve
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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6 software to enable the VGP to package the software in a container.
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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7 Bionanno Solve as shipped in this container may not be the latest and
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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8 may not run efficiently on non-validated hardware. Hence, it is not
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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9 supported by Bionano Genomics. Any questions concerning this version
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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10 should be passed to the VGP (https://github.com/VGP/vgp-assembly/issues)
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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11 or Galaxy community (https://help.galaxyproject.org).
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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12 For the latest supported Bionano software, visit Bionano Support
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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13 https://bionanogenomics.com/support/
13529dc38551 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit b3f6ea67abe31b523fd9132c6b2d9d8a2d3d86f7"
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14 </token>
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33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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15 <xml name="edam_ontology">
1
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16 <edam_topics>
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17 <edam_topic>topic_0196</edam_topic>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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18 </edam_topics>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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19 <edam_operations>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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20 <edam_operation>operation_0525</edam_operation>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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21 </edam_operations>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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22 </xml>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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23 <xml name="requirements">
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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24 <requirements>
7
42b12498bfa6 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bionano commit 25785fac3064e7def7ebccd45d452dc0b22ec89a"
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25 <container type="docker">quay.io/galaxy/bionano-docker-scaffold:1.7.0-bio</container>
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33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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26 </requirements>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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27 </xml>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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28 <macro name="sanitize_string" >
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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29 <sanitizer invalid_char="">
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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30 <valid initial="string.letters,string.digits">
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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31 </valid>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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32 </sanitizer>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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33 </macro>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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34 <xml name="citations">
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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35 <citations>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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36 <citation type="doi">10.1186/s12864-015-1911-8</citation>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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37 </citations>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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38 </xml>
33ce8b6ec877 "planemo upload for repository https://bionanogenomics.com/support/software-downloads/ commit 1d3a1a449c7398c8fad07663224738265f77c0be"
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39 </macros>