Mercurial > repos > bgruening > bedtools_test_bag

view expandBed.xml @ 6:75d323631dce draft

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author bernhardlutz
date Wed, 18 Jun 2014 12:40:28 -0400
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<tool id="bedtools_expandbed" name="ExpandBed" version="0.2.0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command>
        bedtools expand
        -c $cols
        -i $inputA
        &gt; $output
    </command>
    <inputs>
        <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
        <param name="cols" type="text" value="" label="Specify the column(s) (comma separated) that should be summarized" />
    </inputs>
    <outputs>
        <data format_source="inputA" name="output" metadata_source="inputA" label=""/>
    </outputs>
    <help>

**What it does**

Replicate lines in a file based on columns of comma-separated values.

@REFERENCES@
    </help>
</tool>