Mercurial > repos > bgruening > bedtools_test_bag

diff expandBed.xml @ 6:75d323631dce draft

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author bernhardlutz
date Wed, 18 Jun 2014 12:40:28 -0400
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children c782e0edc4f1
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/expandBed.xml	Wed Jun 18 12:40:28 2014 -0400
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+<tool id="bedtools_expandbed" name="ExpandBed" version="0.2.0">
+    <description></description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <command>
+        bedtools expand
+        -c $cols
+        -i $inputA
+        &gt; $output
+    </command>
+    <inputs>
+        <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
+        <param name="cols" type="text" value="" label="Specify the column(s) (comma separated) that should be summarized" />
+    </inputs>
+    <outputs>
+        <data format_source="inputA" name="output" metadata_source="inputA" label=""/>
+    </outputs>
+    <help>
+
+**What it does**
+
+Replicate lines in a file based on columns of comma-separated values.
+
+@REFERENCES@
+    </help>
+</tool>