Mercurial > repos > bgruening > bamhash
changeset 1:a19b36f7ff5d draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/bamhash commit 2749adf8099bbdea4f61759201b3f2b92db5ff0f-dirty
| author | bgruening |
|---|---|
| date | Thu, 17 Sep 2015 06:21:17 -0400 |
| parents | c76494b4ba50 |
| children | 9c74748d39ac |
| files | bamhash.xml tool_dependencies.xml |
| diffstat | 2 files changed, 11 insertions(+), 3 deletions(-) [+] |
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--- a/bamhash.xml Thu Sep 17 06:01:04 2015 -0400 +++ b/bamhash.xml Thu Sep 17 06:21:17 2015 -0400 @@ -9,7 +9,7 @@ <regex match="Error:" /> <regex match="Exception:" /> </stdio> - <version_command>BamHash version 1.1</version_command> + <version_command>bamhash_checksum_fastq --version</version_command> <command><![CDATA[ #if $tool.tool_choice=="bam": #for $counter, $file in enumerate($tool.input_bam):
--- a/tool_dependencies.xml Thu Sep 17 06:01:04 2015 -0400 +++ b/tool_dependencies.xml Thu Sep 17 06:21:17 2015 -0400 @@ -5,8 +5,16 @@ <actions> <action target_filename="BamHash-dd15dee202b4d873768017b8959e8000d62ccf67.tar.gz" type="download_by_url">https://github.com/DecodeGenetics/BamHash/archive/dd15dee202b4d873768017b8959e8000d62ccf67.tar.gz</action> <action type="shell_command">make</action> - <action type="move_directory_files"> - <source_directory>.</source_directory> + <action type="move_file"> + <source_directory>bamhash_checksum_bam</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + <action type="move_file"> + <source_directory>bamhash_checksum_fasta</source_directory> + <destination_directory>$INSTALL_DIR/bin</destination_directory> + </action> + <action type="move_file"> + <source_directory>bamhash_checksum_fastq</source_directory> <destination_directory>$INSTALL_DIR/bin</destination_directory> </action> <action type="set_environment">