diff antismash.xml @ 16:e2df6fe8b447 draft

Uploaded

--- a/antismash.xml	Fri Oct 11 16:06:28 2013 -0400
+++ b/antismash.xml	Fri Oct 11 16:46:08 2013 -0400
@@ -41,29 +41,29 @@
         ## shuffling files to create the correct outputs for Galaxy
         
         ## html output
-        #if 'html' in $outputs:
+        #if 'html' in str($outputs).split(','):
             cp #echo os.path.join($outputfolder, 'index.html')# $html;
         #end if
         
         ## gene clusters
-        #if 'geneclusterprots_tabular' in $outputs:
+        #if 'geneclusterprots_tabular' in str($outputs).split(','):
             cp #echo os.path.join($outputfolder, 'geneclusters.txt')# $geneclusterprots;
         #end if
 
         ##SVG images
-        #if 'archive_svgs' in $outputs:
+        #if 'archive_svgs' in str($outputs).split(','):
             cd #echo os.path.join($outputfolder, 'svg')#;
-            tar cfz $archive_svgs *_all.svg genecluster*;
+            tar cfz $archive_svgs *_all.svg genecluster*;   
         #end if
 
         ##all files in a archive
-        #if 'archive' in $outputs:
+        #if 'archive' in str($outputs).split(','):
             cd $outputfolder;
             tar cf $archive *.zip;
         #end if
 
         ## genbank
-        #if 'gb' in $outputs:
+        #if 'gb' in str($outputs).split(','):
             #for $gb_file in glob.glob( os.path.join($outputfolder, '*.gbk') ):
                 cat $gb_file >> $genbank;
             #end for