comparison antismash.xml @ 16:e2df6fe8b447 draft

Uploaded

15:9a099b9b6857

        ;
        ## shuffling files to create the correct outputs for Galaxy
        
        ## html output
        #if 'html' in $outputs:
            cp #echo os.path.join($outputfolder, 'index.html')# $html;
        #end if
        
        ## gene clusters
        #if 'geneclusterprots_tabular' in $outputs:
            cp #echo os.path.join($outputfolder, 'geneclusters.txt')# $geneclusterprots;
        #end if

        ##SVG images
        #if 'archive_svgs' in $outputs:
            cd #echo os.path.join($outputfolder, 'svg')#;
            tar cfz $archive_svgs *_all.svg genecluster*;
        #end if

        ##all files in a archive
        #if 'archive' in $outputs:
            cd $outputfolder;
            tar cf $archive *.zip;
        #end if

        ## genbank
        #if 'gb' in $outputs:
            #for $gb_file in glob.glob( os.path.join($outputfolder, '*.gbk') ):
                cat $gb_file >> $genbank;
            #end for
        #end if

16:e2df6fe8b447

        ;
        ## shuffling files to create the correct outputs for Galaxy
        
        ## html output
        #if 'html' in str($outputs).split(','):
            cp #echo os.path.join($outputfolder, 'index.html')# $html;
        #end if
        
        ## gene clusters
        #if 'geneclusterprots_tabular' in str($outputs).split(','):
            cp #echo os.path.join($outputfolder, 'geneclusters.txt')# $geneclusterprots;
        #end if

        ##SVG images
        #if 'archive_svgs' in str($outputs).split(','):
            cd #echo os.path.join($outputfolder, 'svg')#;
            tar cfz $archive_svgs *_all.svg genecluster*;   
        #end if

        ##all files in a archive
        #if 'archive' in str($outputs).split(','):
            cd $outputfolder;
            tar cf $archive *.zip;
        #end if

        ## genbank
        #if 'gb' in str($outputs).split(','):
            #for $gb_file in glob.glob( os.path.join($outputfolder, '*.gbk') ):
                cat $gb_file >> $genbank;
            #end for
        #end if