diff tool_dependencies.xml @ 11:d2c2eb518142 draft

Uploaded

--- a/tool_dependencies.xml	Wed Oct 09 10:06:13 2013 -0400
+++ b/tool_dependencies.xml	Wed Oct 09 11:14:23 2013 -0400
@@ -12,9 +12,6 @@
     <package name="muscle" version="3.8.31">
         <repository changeset_revision="ce304c51f69b" name="package_muscle_3_8_31" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="biopython" version="1.62">
-        <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
-    </package>
     <package name="antismash_python_deps" version="2.0.2">
         <install version="1.0">
             <actions>
@@ -54,10 +51,6 @@
                 <!-- Download the binaries for AntiSmash compatible with 64-bit Linux. -->
                 <actions architecture="x86_64" os="linux">
                     <action target_filename="antismash-2.0.2.tar.bz2" type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action>
-                    <action type="move_directory_files">
-                        <source_directory>antismash-2.0.2/*</source_directory>
-                        <destination_directory>$INSTALL_DIR</destination_directory>
-                    </action>
                     <action type="chmod">
                         <file mode="750">$INSTALL_DIR/run_antismash.py</file>
                     </action>