comparison tool_dependencies.xml @ 11:d2c2eb518142 draft

Uploaded

10:d2c785cdf23e

    <package name="hmmer" version="3.0">
        <repository changeset_revision="a44693e3a2c4" name="package_hmmer_3_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="muscle" version="3.8.31">
        <repository changeset_revision="ce304c51f69b" name="package_muscle_3_8_31" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="biopython" version="1.62">
        <repository changeset_revision="ac9cc2992b69" name="package_biopython_1_62" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="antismash_python_deps" version="2.0.2">
        <install version="1.0">
            <actions>
                <action type="setup_virtualenv">helperlibs==0.1.2

                    </action>
                </actions>
                <!-- Download the binaries for AntiSmash compatible with 64-bit Linux. -->
                <actions architecture="x86_64" os="linux">
                    <action target_filename="antismash-2.0.2.tar.bz2" type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action>
                    <action type="move_directory_files">
                        <source_directory>antismash-2.0.2/*</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                    <action type="chmod">
                        <file mode="750">$INSTALL_DIR/run_antismash.py</file>
                    </action>
                    <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz</action>
                    <action type="move_directory_files">

11:d2c2eb518142

    <package name="hmmer" version="3.0">
        <repository changeset_revision="a44693e3a2c4" name="package_hmmer_3_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="muscle" version="3.8.31">
        <repository changeset_revision="ce304c51f69b" name="package_muscle_3_8_31" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="antismash_python_deps" version="2.0.2">
        <install version="1.0">
            <actions>
                <action type="setup_virtualenv">helperlibs==0.1.2

                    </action>
                </actions>
                <!-- Download the binaries for AntiSmash compatible with 64-bit Linux. -->
                <actions architecture="x86_64" os="linux">
                    <action target_filename="antismash-2.0.2.tar.bz2" type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/antismash-2.0.2.x86_64.tar.bz2</action>
                    <action type="chmod">
                        <file mode="750">$INSTALL_DIR/run_antismash.py</file>
                    </action>
                    <action type="download_by_url">https://bitbucket.org/antismash/antismash2/downloads/clusterblast.tar.gz</action>
                    <action type="move_directory_files">