Mercurial > repos > bernhardlutz > rnaz
changeset 0:bd6675443923 draft
Uploaded
author | bernhardlutz |
---|---|
date | Sat, 21 Dec 2013 15:42:57 -0500 |
parents | |
children | 571d8a6ab03f |
files | tool_dependencies.xml |
diffstat | 1 files changed, 24 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Sat Dec 21 15:42:57 2013 -0500 @@ -0,0 +1,24 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="vienna_rna" version="1.8.5"> + <repository changeset_revision="53e25262a701" name="package_vienna_rna_1_8" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + </package> + <package name="exparna" version="1.0"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://www.bioinf.uni-freiburg.de/Software/expaRNA/exparna-1.0.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="53e25262a701" name="package_vienna_rna_1_8" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="vienna_rna" version="1.8.5" /> + </repository> + </action> + <action type="shell_command">./configure --prefix $INSTALL_DIR --with-RNA=$ROOT_VIENNA_RNA_DIR</action> + <action type="make_install" /> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme>Compiling ExpaRNA requires a C compiler (typically gcc)</readme> + </package> +</tool_dependency>