Mercurial > repos > bernhardlutz > rnaz

changeset 0:bd6675443923 draft

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Uploaded
author bernhardlutz
date Sat, 21 Dec 2013 15:42:57 -0500
parents
children 571d8a6ab03f
files tool_dependencies.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Sat Dec 21 15:42:57 2013 -0500
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="vienna_rna" version="1.8.5">
+        <repository changeset_revision="53e25262a701" name="package_vienna_rna_1_8" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="exparna" version="1.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinf.uni-freiburg.de/Software/expaRNA/exparna-1.0.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="53e25262a701" name="package_vienna_rna_1_8" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="vienna_rna" version="1.8.5" />
+                    </repository>
+                </action>
+                <action type="shell_command">./configure --prefix $INSTALL_DIR --with-RNA=$ROOT_VIENNA_RNA_DIR</action>
+                 <action type="make_install" />
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Compiling ExpaRNA requires a C compiler (typically gcc)</readme>
+    </package>
+</tool_dependency>