Mercurial > repos > bernhardlutz > rnaz
changeset 2:30e23427bb9f draft
Deleted selected files
| author | bernhardlutz |
|---|---|
| date | Sun, 22 Dec 2013 12:32:18 -0500 |
| parents | 571d8a6ab03f |
| children | 0acb69966d7c |
| files | rnaz.xml tool_dependencies.xml |
| diffstat | 2 files changed, 0 insertions(+), 46 deletions(-) [+] |
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--- a/rnaz.xml Sun Dec 22 12:04:11 2013 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,22 +0,0 @@ -<tool id="rnaz" name="RNAz" version="0.1.0"> - <description></description> - <requirements> - <requirement type="package" version="1.0">rnaz</requirement> - </requirements> - <command> -RNAz $inputaln $outfile - </command> - <stdio> - <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" /> - <exit_code range=":-1" level="fatal" description="Error occurred. Please check Tool Standard Error" /> - </stdio> - <inputs> - <param format="aln" name="inputaln" type="data" label="Input Alignment File" /> - </inputs> - <outputs> - <data name="outfile" format="txt" /> - </outputs> - <help>**What it does** - - </help> -</tool>
--- a/tool_dependencies.xml Sun Dec 22 12:04:11 2013 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,24 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="vienna_rna" version="1.8.5"> - <repository changeset_revision="53e25262a701" name="package_vienna_rna_1_8" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="exparna" version="1.0"> - <install version="1.0"> - <actions> - <action type="download_by_url">http://www.bioinf.uni-freiburg.de/Software/expaRNA/exparna-1.0.tar.gz</action> - <action type="set_environment_for_install"> - <repository changeset_revision="53e25262a701" name="package_vienna_rna_1_8" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> - <package name="vienna_rna" version="1.8.5" /> - </repository> - </action> - <action type="shell_command">./configure --prefix $INSTALL_DIR --with-RNA=$ROOT_VIENNA_RNA_DIR</action> - <action type="make_install" /> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme>Compiling ExpaRNA requires a C compiler (typically gcc)</readme> - </package> -</tool_dependency>