Mercurial > repos > bernhardlutz > rest_tool
comparison rest_tool.xml @ 10:a76d64d2ed44 draft default tip
Uploaded
| author | bernhardlutz |
|---|---|
| date | Sun, 04 May 2014 14:21:30 -0400 |
| parents | 80bf0039c0dc |
| children |
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| 9:80bf0039c0dc | 10:a76d64d2ed44 |
|---|---|
| 1 <tool id="rest_tool" name="Fetch Data from pubchem" version="0.1.0"> | 1 <tool id="rest_tool" name="Fetch Data from pubchem" version="0.1.0"> |
| 2 <description>Fetch pubchem data</description> | 2 <description>Fetch pubchem data</description> |
| 3 <version_command>echo "0.1.0"</version_command> | 3 <version_command>echo "0.1.0"</version_command> |
| 4 <requirements> | |
| 5 <requirement type="set_environment">REST_TOOL_SCRIPT_PATH</requirement> | |
| 6 </requirements> | |
| 7 <macros> | 4 <macros> |
| 8 <import>rest_tool_macros.xml</import> | 5 <import>rest_tool_macros.xml</import> |
| 9 <import>rest_tool_macro_advanced.xml</import> | 6 <import>rest_tool_macro_advanced.xml</import> |
| 10 </macros> | 7 </macros> |
| 11 <command interpreter="python"> | 8 <command interpreter="python"> |
| 220 <param name="choose_action.input_type.namespace_id.target_select" value="genesymbol" /> | 217 <param name="choose_action.input_type.namespace_id.target_select" value="genesymbol" /> |
| 221 <param name="choose_action.input_type.namespace_id.target_value" value="usp2" /> | 218 <param name="choose_action.input_type.namespace_id.target_value" value="usp2" /> |
| 222 <param name="choose_action.input_type.operation_assay.operation_assay_select" value="aids" /> | 219 <param name="choose_action.input_type.operation_assay.operation_assay_select" value="aids" /> |
| 223 </test> | 220 </test> |
| 224 <test> | 221 <test> |
| 225 <output name="output2"> | 222 <output name="output"> |
| 226 <assert_contents> | 223 <assert_contents> |
| 227 <has_n_columns n="1" /> | 224 <has_n_columns n="1" /> |
| 228 <has_line_matching expression="[0-9]+" /> | 225 <has_line_matching expression="[0-9]+" /> |
| 229 </assert_contents> | 226 </assert_contents> |
| 230 </output> | 227 </output> |
| 235 <param name="choose_action.input_type.namespace_id.xref_value" value="EP0711162A1" /> | 232 <param name="choose_action.input_type.namespace_id.xref_value" value="EP0711162A1" /> |
| 236 <param name="choose_action.input_type.operation_substance.operation_substance_select_select" value="cids" /> | 233 <param name="choose_action.input_type.operation_substance.operation_substance_select_select" value="cids" /> |
| 237 </test> | 234 </test> |
| 238 <!-- post test --> | 235 <!-- post test --> |
| 239 <test> | 236 <test> |
| 240 <output name="output3"> | 237 <output name="output"> |
| 241 <assert_contents> | 238 <assert_contents> |
| 242 <has_n_columns n="1" /> | 239 <has_n_columns n="1" /> |
| 243 <has_line_matching expression="[0-9]+" /> | 240 <has_line_matching expression="[0-9]+" /> |
| 244 </assert_contents> | 241 </assert_contents> |
| 245 </output> | 242 </output> |
| 249 <param name="choose_action.input_type.namespace_id.field_or_file.field_or_file_select" value="file" /> | 246 <param name="choose_action.input_type.namespace_id.field_or_file.field_or_file_select" value="file" /> |
| 250 <param name="choose_action.input_type.namespace_id.field_or_file.id_value" value="postfile" /> | 247 <param name="choose_action.input_type.namespace_id.field_or_file.id_value" value="postfile" /> |
| 251 <param name="choose_action.input_type.operation_substance.operation_substance_select_select" value="cids" /> | 248 <param name="choose_action.input_type.operation_substance.operation_substance_select_select" value="cids" /> |
| 252 </test> | 249 </test> |
| 253 <test> | 250 <test> |
| 254 <output name="output4"> | 251 <output name="output"> |
| 255 <assert_contents> | 252 <assert_contents> |
| 256 <has_n_columns n="1" /> | 253 <has_n_columns n="1" /> |
| 257 <has_line_matching expression="[0-9]+" /> | 254 <has_line_matching expression="[0-9]+" /> |
| 258 </assert_contents> | 255 </assert_contents> |
| 259 </output> | 256 </output> |
| 260 <param name="choose_action.action" value="compounds_for_assay" /> | 257 <param name="choose_action.action" value="compounds_for_assay" /> |
| 261 <param name="choose_action.input_type.input_type_select" value="compound" /> | |
| 262 <param name="choose_action.input_type.namespace_id.namespace_id_select" value="inchi" /> | |
| 263 <param name="choose_action.input_type.namespace_id.field_or_file.field_or_file_select" value="file" /> | 258 <param name="choose_action.input_type.namespace_id.field_or_file.field_or_file_select" value="file" /> |
| 264 <param name="choose_action.input_type.namespace_id.field_or_file.id_value" value="postfile" /> | 259 <param name="choose_action.input_type.namespace_id.field_or_file.id_value" value="12345" /> |
| 265 <param name="choose_action.input_type.operation_substance.operation_substance_select_select" value="cids" /> | 260 <param name="choose_action.input_type.operation_substance.operation_substance_select_select" value="cids" /> |
| 266 </test> | 261 </test> |
| 267 </tests> | 262 </tests> |
| 268 <help> | 263 <help> |
| 269 **What it does** | 264 **What it does** |