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6
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1 #!/usr/bin/env python
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2
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3 import sys, os
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4 import argparse
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5 import readfile
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6
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7 def main(args):
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8 #search for acitivity or target
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9 url="http://pubchem.ncbi.nlm.nih.gov/rest/pug/assay/"
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10 if args.activity is None:
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11 #target
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8
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12 url+= "target/%s/%s" % ( args.targettype, args.targetid )
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6
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13 else:
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14 url+="activity/"+args.activity
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15 url+="/aids/txt"
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16 data=readfile.getresult(url)
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17 args.outfile.write(data)
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18 args.outfile.close()
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19
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20
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21 if __name__ == "__main__":
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22 parser = argparse.ArgumentParser()
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23 parser.add_argument('--activity', type=str,
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24 help="Activities you are looking for")
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25 parser.add_argument('--target-type', dest="target_type", type=str,
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26 help="The target identifier type")
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27 parser.add_argument('--target-id', dest="target_id", type=str,
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28 help="The specific target")
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29 parser.add_argument('--outfile', type=argparse.FileType('w'), required=True,
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30 help="Specify output file")
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31 if len(sys.argv) < 2:
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32 print "Too few arguments..."
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33 parser.print_help()
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34 exit(1)
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35 args = parser.parse_args()
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36 main( args )
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