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1 #!/usr/bin/env python
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2 # Aufruf convert_graph.py --aid list of ids --aid-from-file file
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3
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4 import sys, os
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5 import argparse
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6
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7
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8 import readfile
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9
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10 def main(args):
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11 #search for acitivity or target
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12 url="http://pubchem.ncbi.nlm.nih.gov/rest/pug/assay/"
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13 if args.activity is None:
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14 #target
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15 url+="target/"+args.targettype+"/"+args.targetid
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16 else:
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17 url+="activity/"+args.activity
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18 url+="/aids/txt"
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19 data=readfile.getresult(url)
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20 args.outfile.write(data)
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21 args.outfile.close()
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22
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23
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24 if __name__ == "__main__":
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25 parser = argparse.ArgumentParser()
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26 parser.add_argument('--activity', type=str,
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27 help="Activities you are looking for")
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28 parser.add_argument('--targettype', type=str,
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29 help="The target identifier type")
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30 parser.add_argument('--targetid', type=str,
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31 help="The specific target")
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32 parser.add_argument('--outfile', type=argparse.FileType('w'),
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33 help="Specify output file")
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34 if len(sys.argv) < 2:
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35 print "Too few arguments..."
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36 parser.print_help()
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37 exit(1)
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38 args = parser.parse_args()
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39 main( args )
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