Mercurial > repos > bebatut > package_python_2_7_fisher_0_1_4

changeset 0:22205b5425c8 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_python_2_7_fisher_0_1_4 commit 313952cc4a20e8fb82380bfbf5ede26217197719
author bebatut
date Mon, 22 Feb 2016 07:07:38 -0500
parents
children 594c81c557a1
files tool_dependencies.xml
diffstat 1 files changed, 34 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Feb 22 07:07:38 2016 -0500
@@ -0,0 +1,34 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="python" version="2.7.10">
+        <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="3f5ed97e31de" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="fisher" version="0.1.4">
+        <install version="1.0">
+            <actions>
+                <action type="setup_python_environment">
+                   <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                       <package name="python" version="2.7.10" />
+                   </repository>
+                   <repository changeset_revision="3f5ed97e31de" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.9" />
+                    </repository>
+                    <package md5sum="bfc763b7333a1f428e4c447dd8a85968">
+                        https://pypi.python.org/packages/source/f/fisher/fisher-0.1.4.tar.gz
+                    </package>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
+                    <environment_variable action="set_to" name="PYTHONPATH_FISHER">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="set_to" name="FISHER_ROOT_PATH">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Simple, fast implementation of Fisher’s exact test.</readme>
+    </package>
+</tool_dependency>