Mercurial > repos > bebatut > package_metaphlan2_2_5_0

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/packages/package_metaphlan2_2_5_0 commit 450bf3326f301c344103272b0d761e8625ce0c44-dirty
author bebatut
date Wed, 01 Jun 2016 10:42:18 -0400
parents df037053c83b
children
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<?xml version="1.0"?>
<tool_dependency>
    <package name="python" version="2.7.10">
        <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="numpy" version="1.9">
        <repository changeset_revision="fe0870696ca7" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="metaphlan2" version="2.5.0">
        <install version="1.0">
            <actions>
                <action md5="1a1d5456f2a8b0754e7d1718e6e520df" type="download_by_url">https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.tar.gz</action>
                <action type="move_file">
                    <source>metaphlan2.py</source>
                    <destination>$INSTALL_DIR/</destination>
                </action>
                <action type="move_directory_files">
                    <source_directory>utils/</source_directory>
                    <destination_directory>$INSTALL_DIR/</destination_directory>
                </action>
                <action type="setup_python_environment">
                    <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                       <package name="python" version="2.7.10" />
                    </repository>
                    <repository changeset_revision="fe0870696ca7" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="numpy" version="1.9" />
                    </repository>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="set_to" name="METAPHLAN2_DIR">$INSTALL_DIR/</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/</environment_variable>
                </action>
            </actions>
        </install>
        <readme />
    </package>
</tool_dependency>