Mercurial > repos > bebatut > metaphlan2
changeset 39:99066fa0645b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan2/ commit b'3deaa3adf381c1f3f6134ef6a36074d443f7e3fc\n'-dirty
| author | bebatut |
|---|---|
| date | Tue, 28 Feb 2017 09:54:26 -0500 |
| parents | 4d1bf99ad5ef |
| children | 0cfe385629da |
| files | metaphlan2.xml repository_dependencies.xml |
| diffstat | 2 files changed, 1 insertions(+), 9 deletions(-) [+] |
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--- a/metaphlan2.xml Mon Feb 27 06:12:35 2017 -0500 +++ b/metaphlan2.xml Tue Feb 28 09:54:26 2017 -0500 @@ -20,10 +20,6 @@ <command> <![CDATA[ - (which bowtie2 || exit 200) - - && - #if $db.db_selector == "history" mkdir ref_db && @@ -143,8 +139,6 @@ <param argument="--ignore_bacteria" type='boolean' checked="true" truevalue='' falsevalue='--ignore_bacteria' label="Profile bacteria organisms?"/> <param argument="--ignore_archaea" type='boolean' checked="true" truevalue='' falsevalue='--ignore_archaea' label="Profile archea organisms?"/> <param argument="--stat_q" type="float" value="0.1" label="Quantile value for the robust average"/> - <param argument="--sample_id_key" type="text" value="#SampleID" label="Sample ID key"/> - <param argument="--sample_id" type="text" value="Metaphlan2_Analysis" label="Sample ID"/> </inputs> <outputs> @@ -168,8 +162,6 @@ <param name="ignore_bacteria" value="" /> <param name="ignore_archaea" value="" /> <param name="stat_q" value="0.1" /> - <param name="sample_id_key" value="#SampleID"/> - <param name="sample_id" value="Metaphlan2_Analysis"/> <output name="output_file" file="community_profile.tabular"/> </test> </tests>
--- a/repository_dependencies.xml Mon Feb 27 06:12:35 2017 -0500 +++ b/repository_dependencies.xml Tue Feb 28 09:54:26 2017 -0500 @@ -1,4 +1,4 @@ <?xml version="1.0"?> <repositories description="This requires the MetaPhlAn2 data manager definition to install all required databases."> - <repository changeset_revision="dbfade666d42" name="data_manager_metaphlan2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="1d8f4e8ef24c" name="data_manager_metaphlan2_database_downloader" owner="bebatut" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </repositories>