Mercurial > repos > bebatut > humann2_reduce_table
changeset 6:92fba38bac3e draft default tip
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty
| author | bebatut |
|---|---|
| date | Fri, 03 Mar 2017 06:56:50 -0500 |
| parents | 077cbf494e6b |
| children | |
| files | README.rst |
| diffstat | 1 files changed, 5 insertions(+), 7 deletions(-) [+] |
line wrap: on
line diff
--- a/README.rst Fri Mar 03 06:23:25 2017 -0500 +++ b/README.rst Fri Mar 03 06:56:50 2017 -0500 @@ -4,11 +4,9 @@ Galaxy should be able to automatically install the dependencies, i.e. the HUMAnN2 binaries and its dependencies. -After installation, you must tell Galaxy about the defaut database with -clade-specific marker genes used for taxonomic profiling (MetaPhlAn2), and where -to find it: +After installation, you must tell Galaxy about the defaut databases for MetaPhlAn2 and HUMAnN2. +You need to use the data managers for that and installing: -* Put the ``metaphlan2_db.loc`` file in the ``tool-data/`` folder, after uncommenting last line -* Download whole MetaPhlan2 source code: https://bitbucket.org/biobakery/metaphlan2/get/2.5.0.zip -* Unzip it -* Move ``db_v20`` folder into ``dependency_dir/metaphlan2/2.5.0/bebatut/package_metaphlan2_2_5_0/...`` folder +- MetaPhlAn2 database +- HUMAnN2 nucleotide database +- HUMAnN2 protein database \ No newline at end of file