Mercurial > repos > bebatut > humann2
changeset 4:c05e34aa939b draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit e5b8f29dde45dddcda6ee283212dd1bdde487f87-dirty
author | bebatut |
---|---|
date | Fri, 18 Dec 2015 05:05:04 -0500 |
parents | ddc59d42d17c |
children | 2bf5fcf30e1f |
files | humann2.xml |
diffstat | 1 files changed, 5 insertions(+), 1 deletions(-) [+] |
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--- a/humann2.xml Fri Dec 18 04:28:22 2015 -0500 +++ b/humann2.xml Fri Dec 18 05:05:04 2015 -0500 @@ -19,6 +19,10 @@ </version_command> <command><![CDATA[ + (which diamond || exit 200) + + && + humann2 -i "$input_file" @@ -43,7 +47,7 @@ --metaphlan \${METAPHLAN2_DIR}/ --metaphlan-options "-t rel_ab" --bowtie2 \${PATH} - --diamond \${PATH} + --diamond `which diamond` --threads \${GALAXY_SLOTS:-4}