Mercurial > repos > bebatut > humann2
changeset 20:a8d89b78b6e2 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit b'f45f31529390153bdaf93a3c94a65f6888ed484b\n'-dirty
| author | bebatut |
|---|---|
| date | Fri, 03 Mar 2017 06:36:50 -0500 |
| parents | 8192fbe69c0e |
| children | 8b86d590b442 |
| files | humann2.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/humann2.xml Fri Mar 03 06:18:29 2017 -0500 +++ b/humann2.xml Fri Mar 03 06:36:50 2017 -0500 @@ -64,13 +64,13 @@ --taxonomic-profile '$taxo_profile.taxonomic_profile' #else #if $taxo_profile.metaphlan2_db_choice.metaphlan2_db_selector == "history" - #set $metaphlan_option += " --bowtie2db " + ref_db/ref_db - #set $metaphlan_option += " --mpa_pkl " + ref_db/metadata.pkl + #set $metaphlan_option += ' --bowtie2db ' + ref_db/ref_db + #set $metaphlan_option += ' --mpa_pkl ' + ref_db/metadata.pkl #else #set $path = $taxo_profile.metaphlan2_db_choice.cached_db.fields.path #set $value = $taxo_profile.metaphlan2_db_choice.cached_db.fields.value - --bowtie2db $path/$value - --mpa_pkl $path/$value'.pkl' + #set $metaphlan_option += ' --bowtie2db ' + $path/$value + #set $metaphlan_option += ' --mpa_pkl ' + $path/$value + '.pkl' #end if #end if --metaphlan-options="$metaphlan_option"