Mercurial > repos > bebatut > humann2

annotate test-data/humann2_sam_pathcoverage.tsv @ 7:d084f63fbf30 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit e5b8f29dde45dddcda6ee283212dd1bdde487f87-dirty
author bebatut
date Fri, 18 Dec 2015 09:04:07 -0500
parents 947012405a6e
children
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947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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1 # Pathway humann2_Coverage
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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2 PWY-7208: superpathway of pyrimidine nucleobases salvage 0.8326116675
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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3 PWY-7208: superpathway of pyrimidine nucleobases salvage|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.7887151367
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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4 PWY-3841: folate transformations II 0.7981953577
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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5 PWY-7221: guanosine ribonucleotides de novo biosynthesis 0.7732485560
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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6 PWY-7221: guanosine ribonucleotides de novo biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5731619001
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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7 1CMET2-PWY: N10-formyl-tetrahydrofolate biosynthesis 0.7495073164
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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8 PWY-5100: pyruvate fermentation to acetate and lactate II 0.7410248669
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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9 PWY-5100: pyruvate fermentation to acetate and lactate II|g__Bacteroides.s__Bacteroides_stercoris 0.7881393909
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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10 PYRIDOXSYN-PWY: pyridoxal 5'-phosphate biosynthesis I 0.6941671038
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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11 PYRIDOXSYN-PWY: pyridoxal 5'-phosphate biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.6450407623
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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12 PWY-5505: L-glutamate and L-glutamine biosynthesis 0.6903428673
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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13 PWY-5505: L-glutamate and L-glutamine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.7047445298
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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14 HSERMETANA-PWY: L-methionine biosynthesis III 0.6861852057
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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15 HSERMETANA-PWY: L-methionine biosynthesis III|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5522121285
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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16 HOMOSER-METSYN-PWY: L-methionine biosynthesis I 0.6441336419
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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17 HOMOSER-METSYN-PWY: L-methionine biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5982506088
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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18 DTDPRHAMSYN-PWY: dTDP-L-rhamnose biosynthesis I 0.6416934147
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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19 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I 0.6270534008
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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20 SER-GLYSYN-PWY: superpathway of L-serine and glycine biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5174177685
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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21 PWY66-422: D-galactose degradation V (Leloir pathway) 0.6162679643
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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22 PWY66-422: D-galactose degradation V (Leloir pathway)|g__Bacteroides.s__Bacteroides_stercoris 0.6850888598
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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23 PWY-6507: 4-deoxy-L-threo-hex-4-enopyranuronate degradation 0.6138469918
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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24 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I 0.6077002683
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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25 PWY-7228: superpathway of guanosine nucleotides de novo biosynthesis I|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.4750575774
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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26 PWY-7242: D-fructuronate degradation 0.5964915791
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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27 PWY-5030: L-histidine degradation III 0.5883052819
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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28 VALSYN-PWY: L-valine biosynthesis 0.5688165005
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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29 VALSYN-PWY: L-valine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.4748410191
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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30 GLUCUROCAT-PWY: superpathway of β-D-glucuronide and D-glucuronate degradation 0.5677917487
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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31 CALVIN-PWY: Calvin-Benson-Bassham cycle 0.5485251397
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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32 PWY-5659: GDP-mannose biosynthesis 0.5282770203
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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33 PWY-5659: GDP-mannose biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.4801917076
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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34 RHAMCAT-PWY: L-rhamnose degradation I 0.5016200440
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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35 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis 0.5008438557
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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36 ASPASN-PWY: superpathway of L-aspartate and L-asparagine biosynthesis|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.5109686863
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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37 GALACTUROCAT-PWY: D-galacturonate degradation I 0.4965486979
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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38 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II 0.4941295971
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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39 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_stercoris 0.4619040484
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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40 PWY-7220: adenosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.3767488276
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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41 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II 0.4941295971
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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42 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_stercoris 0.4619040484
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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43 PWY-7222: guanosine deoxyribonucleotides de novo biosynthesis II|g__Bacteroides.s__Bacteroides_thetaiotaomicron 0.3767488276
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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44 PWY-6125: superpathway of guanosine nucleotides de novo biosynthesis II 0.4768751535
947012405a6e planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/humann2/ commit dd6f3fda4d992efa4a91ee0823ecc3af8a9532d3-dirty
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45 PWY-3781: aerobic respiration I (cytochrome c) 0.4275710623