diff graphlan_annotate.xml @ 1:5cdaa98d9376 draft

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit f20ebff87883fc5639f540418257ca04ce8296fb-dirty

--- a/graphlan_annotate.xml	Mon Feb 01 07:45:14 2016 -0500
+++ b/graphlan_annotate.xml	Fri Apr 01 05:51:57 2016 -0400
@@ -1,4 +1,4 @@
-<tool id="graphlan_annotate" name="Modify an input tree for GraPhlAn" version="0.1.0">
+<tool id="graphlan_annotate" name="Modify an input tree for GraPhlAn" version="1.0">
 
     <description></description>
 
@@ -13,13 +13,13 @@
 
     <version_command>
 <![CDATA[
-python \${GRAPHLAN_DIR}/graphlan_annotate.py -v
+graphlan_annotate.py -v
 ]]>
     </version_command>
 
     <command>
 <![CDATA[        
-        python \${GRAPHLAN_DIR}/graphlan_annotate.py
+        graphlan_annotate.py
             #if $annot
                 --annot $annot
             #end if
@@ -38,12 +38,15 @@
     </inputs>
 
     <outputs>
-        <data format="text" name="output_tree" 
+        <data format="txt" name="output_tree" 
             label="${tool.name} on ${on_string}: Tree in PhyloXML" />
     </outputs>
 
     <tests>
         <test>
+            <param name="input_tree" value="input_tree.txt" />
+            <param name="annot" value="input_annotation.txt" />
+            <output name="output_tree" value="output_modified_tree.txt" />
         </test>
     </tests>