comparison graphlan_annotate.xml @ 1:5cdaa98d9376 draft

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/graphlan/ commit f20ebff87883fc5639f540418257ca04ce8296fb-dirty

0:c5746c07ca5e

<tool id="graphlan_annotate" name="Modify an input tree for GraPhlAn" version="0.1.0">

    <description></description>

    <requirements>
        <requirement type="package" version="1.66">biopython</requirement>

    <stdio>
    </stdio>

    <version_command>
<![CDATA[
python \${GRAPHLAN_DIR}/graphlan_annotate.py -v
]]>
    </version_command>

    <command>
<![CDATA[        
        python \${GRAPHLAN_DIR}/graphlan_annotate.py
            #if $annot
                --annot $annot
            #end if

            $input_tree

        <param name="annot" type="data" format="txt" label="Annotation file 
            (Optional)" help="(--annot)" optional="True"/>
    </inputs>

    <outputs>
        <data format="text" name="output_tree" 
            label="${tool.name} on ${on_string}: Tree in PhyloXML" />
    </outputs>

    <tests>
        <test>
        </test>
    </tests>

    <help><![CDATA[

1:5cdaa98d9376

<tool id="graphlan_annotate" name="Modify an input tree for GraPhlAn" version="1.0">

    <description></description>

    <requirements>
        <requirement type="package" version="1.66">biopython</requirement>

    <stdio>
    </stdio>

    <version_command>
<![CDATA[
graphlan_annotate.py -v
]]>
    </version_command>

    <command>
<![CDATA[        
        graphlan_annotate.py
            #if $annot
                --annot $annot
            #end if

            $input_tree

        <param name="annot" type="data" format="txt" label="Annotation file 
            (Optional)" help="(--annot)" optional="True"/>
    </inputs>

    <outputs>
        <data format="txt" name="output_tree" 
            label="${tool.name} on ${on_string}: Tree in PhyloXML" />
    </outputs>

    <tests>
        <test>
            <param name="input_tree" value="input_tree.txt" />
            <param name="annot" value="input_annotation.txt" />
            <output name="output_tree" value="output_modified_tree.txt" />
        </test>
    </tests>

    <help><![CDATA[