Mercurial > repos > bebatut > data_manager_sortmerna_database_downloader
changeset 2:663d040f8e5c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_sortmerna_database_downloader commit 6aa3014c2c6f9ef9ee71b20cfffec461b3a102a5-dirty
| author | bebatut |
|---|---|
| date | Tue, 06 Jun 2017 08:41:03 -0400 |
| parents | 76e849a0a0b7 |
| children | d56a5622b889 |
| files | data_manager/data_manager_sortmerna_download.py data_manager_conf.xml tool-data/rRNA_databases.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 4 files changed, 3 insertions(+), 5 deletions(-) [+] |
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--- a/data_manager/data_manager_sortmerna_download.py Wed May 31 07:01:57 2017 -0400 +++ b/data_manager/data_manager_sortmerna_download.py Tue Jun 06 08:41:03 2017 -0400 @@ -139,8 +139,7 @@ add_data_table_entry( data_tables, "rRNA_databases", - dict( - dbkey=db_name, + dict( value=version, name=db_name, path=output_filepath))
--- a/data_manager_conf.xml Wed May 31 07:01:57 2017 -0400 +++ b/data_manager_conf.xml Tue Jun 06 08:41:03 2017 -0400 @@ -5,7 +5,6 @@ <output> <!-- Handle the output of the Data Manager Tool --> <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> - <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> <column name="path" output_ref="out_file" > <move type="file"> <source>${path}</source>
--- a/tool-data/rRNA_databases.loc.sample Wed May 31 07:01:57 2017 -0400 +++ b/tool-data/rRNA_databases.loc.sample Tue Jun 06 08:41:03 2017 -0400 @@ -1,2 +1,2 @@ -#<unique_id> <database_caption> <name> <fasta_file_path> +#<unique_id> <database_caption> <fasta_file_path>
--- a/tool_data_table_conf.xml.sample Wed May 31 07:01:57 2017 -0400 +++ b/tool_data_table_conf.xml.sample Tue Jun 06 08:41:03 2017 -0400 @@ -1,6 +1,6 @@ <tables> <table name="rRNA_databases" comment_char="#"> - <columns>value, name, dbkey, path</columns> + <columns>value, name, path</columns> <file path="tool-data/rRNA_databases.loc" /> </table> </tables> \ No newline at end of file