Mercurial > repos > bebatut > data_manager_qiime_database_downloader

changeset 13:a34f082f9deb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 9a8e5333c047c6a5c18ca8f139a979704644ad87-dirty
author bebatut
date Fri, 05 May 2017 09:33:42 -0400
parents c068e97553b0
children 36b38629191b
files data_manager/data_manager_qiime_download.py
diffstat 1 files changed, 6 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_qiime_download.py	Fri May 05 07:52:26 2017 -0400
+++ b/data_manager/data_manager_qiime_download.py	Fri May 05 09:33:42 2017 -0400
@@ -258,10 +258,13 @@
 
 
 def move_files(archive_content_path, filename_prefix, 
-name_prefix, data_tables, target_dir, db):
+name_prefix, data_tables, target_dir, db, version):
     """
     """
     for filetype in filetypes:
+        if filetype == "rep_set_aligned":
+            if db == "greengenes" and version == "12_10":
+                continue
         filetype_target_dir = os.path.join(
             target_dir,
             filetype)
@@ -315,7 +318,8 @@
             name_prefix, 
             data_tables,
             target_dir,
-            db)
+            db,
+            version)
     elif db == "unite":
         move_unite_files(
             archive_content_path,