Mercurial > repos > bebatut > data_manager_qiime_database_downloader
changeset 1:7e531c146c03 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_qiime_database_downloader commit 9a8e5333c047c6a5c18ca8f139a979704644ad87-dirty
| author | bebatut |
|---|---|
| date | Wed, 03 May 2017 11:42:29 -0400 |
| parents | 9d0aeeeccb72 |
| children | 451de7a72320 |
| files | tool-data/qiime_reference_db.loc.sample tool-data/qiime_rep_set.loc.sample tool-data/qiime_rep_set_aligned.loc.sample tool-data/qiime_taxonomy.loc.sample tool-data/qiime_trees.loc.sample |
| diffstat | 5 files changed, 24 insertions(+), 32 deletions(-) [+] |
line wrap: on
line diff
--- a/tool-data/qiime_reference_db.loc.sample Wed May 03 08:12:54 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,32 +0,0 @@ -#<unique_id> <database_caption> <fasta_file_path> -# -#For each reference database, you need to download the fasta file in qiime path -# -#List of useful db for qiime: http://qiime.org/home_static/dataFiles.html -# -#silva-119-90 SILVA v.119 90% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set90_aligned.fna -#silva-119-90-16S SILVA v.119 90% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set90_aligned_16S_only.fna -#silva-119-90-18S SILVA v.119 90% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set90_aligned_18S_only.fna -#silva-119-94 SILVA v.119 94% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set94_aligned.fna -#silva-119-94-16S SILVA v.119 94% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set94_aligned_16S_only.fna -#silva-119-94-18S SILVA v.119 94% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set94_aligned_18S_only.fna -#silva-119-97 SILVA v.119 97% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set97_aligned.fna -#silva-119-97-16S SILVA v.119 97% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set97_aligned_16S_only.fna -#silva-119-97-18S SILVA v.119 97% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set97_aligned_18S_only.fna -#silva-119-99 SILVA v.119 99% $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set99_aligned.fna -#silva-119-99-16S SILVA v.119 99% (16S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set99_aligned_16S_only.fna -#silva-119-99-18S SILVA v.119 99% (18S only) $QIIME_ROOT_PATH/reference_db/Silva_119_rep_set99_aligned_18S_only.fna -#gg-13-8-61 Greengenes v.13.8 61% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_61.fasta -#gg-13-8-64 Greengenes v.13.8 64% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_64.fasta -#gg-13-8-67 Greengenes v.13.8 67% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_67.fasta -#gg-13-8-70 Greengenes v.13.8 70% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_70.fasta -#gg-13-8-73 Greengenes v.13.8 73% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_73.fasta -#gg-13-8-76 Greengenes v.13.8 76% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_76.fasta -#gg-13-8-79 Greengenes v.13.8 79% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_79.fasta -#gg-13-8-82 Greengenes v.13.8 82% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_82.fasta -#gg-13-8-85 Greengenes v.13.8 85% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_85.fasta -#gg-13-8-88 Greengenes v.13.8 88% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_88.fasta -#gg-13-8-91 Greengenes v.13.8 91% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_91.fasta -#gg-13-8-94 Greengenes v.13.8 94% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_94.fasta -#gg-13-8-97 Greengenes v.13.8 97% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_97.fasta -#gg-13-8-99 Greengenes v.13.8 99% $QIIME_ROOT_PATH/reference_db/gg_13_8_rep_99.fasta \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/qiime_rep_set.loc.sample Wed May 03 11:42:29 2017 -0400 @@ -0,0 +1,6 @@ +#<unique_id> <name> <database_caption> <fasta_file_path> +# +#For each reference database, you need to download the fasta file in qiime path +# +#List of useful db for qiime: http://qiime.org/home_static/dataFiles.html +# \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/qiime_rep_set_aligned.loc.sample Wed May 03 11:42:29 2017 -0400 @@ -0,0 +1,6 @@ +#<unique_id> <name> <database_caption> <fasta_file_path> +# +#For each reference database, you need to download the fasta file in qiime path +# +#List of useful db for qiime: http://qiime.org/home_static/dataFiles.html +# \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/qiime_taxonomy.loc.sample Wed May 03 11:42:29 2017 -0400 @@ -0,0 +1,6 @@ +#<unique_id> <name> <database_caption> <fasta_file_path> +# +#For each reference database, you need to download the fasta file in qiime path +# +#List of useful db for qiime: http://qiime.org/home_static/dataFiles.html +# \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/qiime_trees.loc.sample Wed May 03 11:42:29 2017 -0400 @@ -0,0 +1,6 @@ +#<unique_id> <name> <database_caption> <fasta_file_path> +# +#For each reference database, you need to download the fasta file in qiime path +# +#List of useful db for qiime: http://qiime.org/home_static/dataFiles.html +# \ No newline at end of file