Mercurial > repos > bebatut > data_manager_metaphlan2_database_downloader

changeset 8:dbfade666d42 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit bad4bb2f4bae0689a583c96d54193b937a340bb8-dirty
author bebatut
date Tue, 21 Feb 2017 08:49:45 -0500
parents c2480b29f64e
children a4b5d0fcd2b2
files data_manager_conf.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_conf.xml	Tue Feb 21 07:01:23 2017 -0500
+++ b/data_manager_conf.xml	Tue Feb 21 08:49:45 2017 -0500
@@ -7,10 +7,11 @@
                 <column name="name" />  <!-- columns that are going to be specified by the Data Manager Tool -->
                 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
                 <column name="path" output_ref="out_file" >
-                    <move type="directory" relativize_symlinks="True">
+                    <move type="directory">
+                        <source>${path}</source>
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metaphlan2/data/${dbkey}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan2/data/${dbkey}/metaphlan2/data/</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan2/data/${dbkey}</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>