Mercurial > repos > bebatut > data_manager_metaphlan2_database_downloader

changeset 13:47051e7fefd1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit b'3deaa3adf381c1f3f6134ef6a36074d443f7e3fc\n'-dirty
author bebatut
date Wed, 01 Mar 2017 08:02:45 -0500
parents c60e9556befb
children 0718cabc9236
files data_manager/data_manager_metaphlan2_download.py
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_metaphlan2_download.py	Wed Mar 01 04:25:17 2017 -0500
+++ b/data_manager/data_manager_metaphlan2_download.py	Wed Mar 01 08:02:45 2017 -0500
@@ -96,6 +96,8 @@
     """
     today = datetime.date.today()
     cmd = "download_metaphlan2_db.py --output %s" % (target_dir)
+    db_dir = os.path.join(target_dir, build)
+    os.rename(os.path.join(target_dir, "db_v20"), db_dir)
     subprocess.check_call(cmd, shell=True)
     add_data_table_entry(
         data_tables,
@@ -104,7 +106,7 @@
             dbkey=build,
             value=today.isoformat(),
             name="MetaPhlAn2 clade-specific marker genes",
-            path=target_dir))
+            path=db_dir))
 
 
 if __name__ == "__main__":