Mercurial > repos > bebatut > data_manager_humann2_database_downloader

changeset 7:1c2eb6bd1cd1 draft

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planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/data_managers/data_manager_humann2_database_downloader commit b'318eb33ea866441cc9b2f98bdda88dd594037a0e\n'-dirty
author bebatut
date Thu, 02 Mar 2017 05:04:37 -0500
parents 75898d1aabc3
children a0eed08a6b61
files data_manager/data_manager_humann2_download.py
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_humann2_download.py	Thu Mar 02 04:52:41 2017 -0500
+++ b/data_manager/data_manager_humann2_download.py	Thu Mar 02 05:04:37 2017 -0500
@@ -116,7 +116,9 @@
                                                      build,
                                                      db_target_dir)
     subprocess.check_call(cmd, shell=True)
+    print(os.listdir(db_target_dir))
     os.rename(os.path.join(db_target_dir, database), build_target_dir)
+    print(os.listdir(db_target_dir))
     add_data_table_entry(
         data_tables,
         table_name,
@@ -124,7 +126,7 @@
             dbkey=build,
             value=value,
             name=HUMANN2_REFERENCE_DATA[build], 
-            path=db_target_dir))
+            path=build_target_dir))
 
 
 if __name__ == "__main__":