Mercurial > repos > bcclaywell > microbiome_pplacer_suite

diff classification-wrapper.sh @ 0:d4690e65afcd draft

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author bcclaywell
date Thu, 26 Feb 2015 18:16:36 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/classification-wrapper.sh	Thu Feb 26 18:16:36 2015 -0500
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+source $(dirname $0)/util.sh
+source $1
+
+classif_table.py \
+    --specimen-map ${SPLIT_MAP} \
+    --metadata-map ${LABEL_MAP} \
+    --rank ${WANT_RANK} \
+    --tallies-wide ${TALLIES_WIDE} \
+    --by-specimen ${BY_SPECIMEN} \
+    ${CLASS_DB} \
+    ${BY_TAXON}