Mercurial > repos > bcclaywell > microbiome_pplacer_suite
comparison classification-wrapper.sh @ 0:d4690e65afcd draft
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author | bcclaywell |
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date | Thu, 26 Feb 2015 18:16:36 -0500 |
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-1:000000000000 | 0:d4690e65afcd |
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1 #!/bin/bash | |
2 | |
3 source $(dirname $0)/util.sh | |
4 source $1 | |
5 | |
6 classif_table.py \ | |
7 --specimen-map ${SPLIT_MAP} \ | |
8 --metadata-map ${LABEL_MAP} \ | |
9 --rank ${WANT_RANK} \ | |
10 --tallies-wide ${TALLIES_WIDE} \ | |
11 --by-specimen ${BY_SPECIMEN} \ | |
12 ${CLASS_DB} \ | |
13 ${BY_TAXON} |