diff macros.xml @ 6:3c50a937d7c1 draft

Uploaded

--- a/macros.xml	Thu Mar 26 16:56:09 2015 -0400
+++ b/macros.xml	Wed Apr 15 19:14:23 2015 -0400
@@ -5,4 +5,49 @@
     <regex match="traceback" level="fatal"/>
     <regex match="warning" level="warning"/>
   </macro>
+  <macro name="cite_seqmagick">
+    <citation type="bibtex">@MISC{fhcrc_seqmagick,
+  title       = {seqmagick: An imagemagick-like frontend to Biopython SeqIO},
+  author      = {McCoy, C. O. and Hodges, B. and Rosenthal, C. and Gallagher, A. and Matsen, IV, F. A.},
+  publisher   = {GitHub},
+  url         = "http://github.com/fhcrc/seqmagick",
+  note        = "version 0.5.0"
+}
+    </citation>
+  </macro>
+  <!-- Biopython 1.63 -->
+  <macro name="cite_biopython">
+    <citation type="doi">10.1093/bioinformatics/btp163</citation>
+  </macro>
+  <macro name="cite_taxtastic">
+    <citation type="bibtex">@MISC{fhcrc_taxtastic,
+  title       = {taxtastic: Create and maintain phylogenetic "reference packages" of biological sequences},
+  author      = {McCoy, C. O. and Hoffman, N. G. and Gallagher, A. and Hodges, B. and Ross, F. and Matsen, IV, F. A.},
+  publisher   = {GitHub},
+  url         = "http://github.com/fhcrc/taxtastic",
+  note        = "version 0.5.2"
+}
+    </citation>
+  </macro>
+  <!-- INFERNAL 1.1 -->
+  <macro name="cite_infernal">
+    <citation type="doi">10.1093/bioinformatics/btt509</citation>
+  </macro>
+  <!-- pplacer 1.1alpha
+       (the citation is for pplacer 1.0) -->
+  <macro name="cite_pplacer">
+    <citation type="doi">10.1186/1471-2105-11-538</citation>
+    <citation type="bibtex">@MISC{fhcrc_pplacer,
+  title       = {pplacer: Phylogenetic placement and downstream analysis},
+  author      = {Gallagher, A. and McCoy, C. O. and Claywell, B. C. and Small, C. T. and Hodges, B. and Hoffman, N. G. and Matsen, IV, F. A.},
+  publisher   = {GitHub},
+  url         = "http://github.com/matsen/pplacer",
+  note        = "version v1.1.alpha16-1-gf748c91"
+}
+    </citation>
+  </macro>
+  <!-- USEARCH 6 -->
+  <macro name="cite_usearch">
+    <citation type="doi">10.1093/bioinformatics/btq461</citation>
+  </macro>
 </macros>