Mercurial > repos > bcclaywell > microbiome_pplacer_suite
comparison macros.xml @ 6:3c50a937d7c1 draft
Uploaded
author | bcclaywell |
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date | Wed, 15 Apr 2015 19:14:23 -0400 |
parents | d4690e65afcd |
children |
comparison
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5:2d023c621bd0 | 6:3c50a937d7c1 |
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3 <exit_code range="1:" level="fatal"/> | 3 <exit_code range="1:" level="fatal"/> |
4 <regex match="error" level="fatal"/> | 4 <regex match="error" level="fatal"/> |
5 <regex match="traceback" level="fatal"/> | 5 <regex match="traceback" level="fatal"/> |
6 <regex match="warning" level="warning"/> | 6 <regex match="warning" level="warning"/> |
7 </macro> | 7 </macro> |
8 <macro name="cite_seqmagick"> | |
9 <citation type="bibtex">@MISC{fhcrc_seqmagick, | |
10 title = {seqmagick: An imagemagick-like frontend to Biopython SeqIO}, | |
11 author = {McCoy, C. O. and Hodges, B. and Rosenthal, C. and Gallagher, A. and Matsen, IV, F. A.}, | |
12 publisher = {GitHub}, | |
13 url = "http://github.com/fhcrc/seqmagick", | |
14 note = "version 0.5.0" | |
15 } | |
16 </citation> | |
17 </macro> | |
18 <!-- Biopython 1.63 --> | |
19 <macro name="cite_biopython"> | |
20 <citation type="doi">10.1093/bioinformatics/btp163</citation> | |
21 </macro> | |
22 <macro name="cite_taxtastic"> | |
23 <citation type="bibtex">@MISC{fhcrc_taxtastic, | |
24 title = {taxtastic: Create and maintain phylogenetic "reference packages" of biological sequences}, | |
25 author = {McCoy, C. O. and Hoffman, N. G. and Gallagher, A. and Hodges, B. and Ross, F. and Matsen, IV, F. A.}, | |
26 publisher = {GitHub}, | |
27 url = "http://github.com/fhcrc/taxtastic", | |
28 note = "version 0.5.2" | |
29 } | |
30 </citation> | |
31 </macro> | |
32 <!-- INFERNAL 1.1 --> | |
33 <macro name="cite_infernal"> | |
34 <citation type="doi">10.1093/bioinformatics/btt509</citation> | |
35 </macro> | |
36 <!-- pplacer 1.1alpha | |
37 (the citation is for pplacer 1.0) --> | |
38 <macro name="cite_pplacer"> | |
39 <citation type="doi">10.1186/1471-2105-11-538</citation> | |
40 <citation type="bibtex">@MISC{fhcrc_pplacer, | |
41 title = {pplacer: Phylogenetic placement and downstream analysis}, | |
42 author = {Gallagher, A. and McCoy, C. O. and Claywell, B. C. and Small, C. T. and Hodges, B. and Hoffman, N. G. and Matsen, IV, F. A.}, | |
43 publisher = {GitHub}, | |
44 url = "http://github.com/matsen/pplacer", | |
45 note = "version v1.1.alpha16-1-gf748c91" | |
46 } | |
47 </citation> | |
48 </macro> | |
49 <!-- USEARCH 6 --> | |
50 <macro name="cite_usearch"> | |
51 <citation type="doi">10.1093/bioinformatics/btq461</citation> | |
52 </macro> | |
8 </macros> | 53 </macros> |