Mercurial > repos > bcclaywell > argo_navis

annotate venv/lib/python2.7/site-packages/planemo/galaxy_run.py @ 0:d67268158946 draft

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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
author bcclaywell
date Mon, 12 Oct 2015 17:43:33 -0400
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d67268158946 planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
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1 from planemo.io import info
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2 from galaxy.tools.deps.commands import shell
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5 # Activate galaxy's virtualenv if present (needed for tests say but not for
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6 # server because run.sh does this).
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7 ACTIVATE_COMMAND = "[ -e .venv ] && . .venv/bin/activate"
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9 # TODO: Mac-y curl variant of this.
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10 DOWNLOAD_GALAXY = (
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11 "wget https://codeload.github.com/galaxyproject/galaxy/tar.gz/dev"
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12 )
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15 def run_galaxy_command(ctx, command, env, action, daemon=False):
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16 message = "%s with command [%s]" % (action, command)
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17 info(message)
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18 ctx.vlog("With environment variables:")
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19 ctx.vlog("============================")
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20 for key, value in env.items():
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21 ctx.vlog('%s="%s"' % (key, value))
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22 ctx.vlog("============================")
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23 return shell(command, env=env)