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annotate venv/lib/python2.7/site-packages/planemo/commands/cmd_serve.py @ 0:d67268158946 draft

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planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
author bcclaywell
date Mon, 12 Oct 2015 17:43:33 -0400
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d67268158946 planemo upload commit a3f181f5f126803c654b3a66dd4e83a48f7e203b
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1 import click
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2
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3 from planemo.cli import pass_context
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4 from planemo import galaxy_serve
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5 from planemo import options
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6
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7
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8 @click.command('serve')
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9 @options.optional_tools_arg(multiple=True)
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10 @options.galaxy_serve_options()
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11 @pass_context
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12 def cli(ctx, paths, **kwds):
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13 """Launch a Galaxy instance with the specified tool in the tool panel.
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14
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15 The Galaxy tool panel will include just the referenced tool or tools (by
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16 default all the tools in the current working directory) and the upload
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17 tool.
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18
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19 planemo will search parent directories to see if any is a Galaxy instance
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20 - but one can pick the Galaxy instance to use with the ``--galaxy_root``
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21 option or force planemo to download a disposable instance with the
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22 ``--install_galaxy`` flag.
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23
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24 ``planemo`` will run the Galaxy instance in an existing virtualenv if one
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25 exists in a ``.venv`` directory in the specified ``--galaxy_root``.
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26 Otherwise, the Galaxy instance will run in a clean virtualenv created in
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27 ``/tmp``.
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28
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29 ``planemo`` uses temporarily generated config files and environment
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30 variables to attempt to shield this execution of Galaxy from manually
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31 launched runs against that same Galaxy root - but this may not be bullet
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32 proof yet so please careful and do not try this against production Galaxy
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33 instances.
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34 """
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35 galaxy_serve.serve(ctx, paths, **kwds)