Mercurial > repos > badger > trinityrnaseq

annotate tool_dependencies.xml @ 6:8d546ef8cfea draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add RSEM_abundance_estimation
author Jim Johnson <jj@umn.edu>
date Fri, 22 Nov 2013 14:48:39 -0600
parents a67c0a0d24ac
children 964364c9279f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
d4ce07eb63bd Uploaded
jjohnson
parents:
diff changeset
1 <?xml version="1.0"?>
d4ce07eb63bd Uploaded
jjohnson
parents:
diff changeset
2 <tool_dependency>
1
a34ce2b18877 Update tool_dependencies to trinityrnaseq_2013_08_14 and add samtools and bowtie
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
3 <package name="trinityrnaseq" version="2013_08_14">
a34ce2b18877 Update tool_dependencies to trinityrnaseq_2013_08_14 and add samtools and bowtie
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
4 <repository changeset_revision="df23c0ef83a6" name="package_trinityrnaseq_2013_08_14" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
a34ce2b18877 Update tool_dependencies to trinityrnaseq_2013_08_14 and add samtools and bowtie
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
5 </package>
a34ce2b18877 Update tool_dependencies to trinityrnaseq_2013_08_14 and add samtools and bowtie
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
6 <package name="samtools" version="0.1.18">
5
a67c0a0d24ac Update samtools tool_dependency
Jim Johnson <jj@umn.edu>
parents: 2
diff changeset
7 <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
1
a34ce2b18877 Update tool_dependencies to trinityrnaseq_2013_08_14 and add samtools and bowtie
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
8 </package>
a34ce2b18877 Update tool_dependencies to trinityrnaseq_2013_08_14 and add samtools and bowtie
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
9 <package name="bowtie" version="1.0.0">
a34ce2b18877 Update tool_dependencies to trinityrnaseq_2013_08_14 and add samtools and bowtie
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
10 <repository changeset_revision="e682af6a72cd" name="package_bowtie_1_0_0" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
0
d4ce07eb63bd Uploaded
jjohnson
parents:
diff changeset
11 </package>
2
5eb99d21ef0d Add trinityrnaseq_norm and transcriptsToOrfs tools
Jim Johnson <jj@umn.edu>
parents: 1
diff changeset
12 <package name="hmmer" version="3.0">
5eb99d21ef0d Add trinityrnaseq_norm and transcriptsToOrfs tools
Jim Johnson <jj@umn.edu>
parents: 1
diff changeset
13 <repository changeset_revision="3bc37773c609" name="package_hmmer_3_0" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5eb99d21ef0d Add trinityrnaseq_norm and transcriptsToOrfs tools
Jim Johnson <jj@umn.edu>
parents: 1
diff changeset
14 </package>
6
8d546ef8cfea Add RSEM_abundance_estimation
Jim Johnson <jj@umn.edu>
parents: 5
diff changeset
15 <package name="rsem" version="1.1.17">
8d546ef8cfea Add RSEM_abundance_estimation
Jim Johnson <jj@umn.edu>
parents: 5
diff changeset
16 <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_rsem_1_1_17" owner="jjohnson" changeset_revision="9fa1826ae6d4" />
8d546ef8cfea Add RSEM_abundance_estimation
Jim Johnson <jj@umn.edu>
parents: 5
diff changeset
17 </package>
0
d4ce07eb63bd Uploaded
jjohnson
parents:
diff changeset
18 </tool_dependency>
d4ce07eb63bd Uploaded
jjohnson
parents:
diff changeset
19